Transcript Information: R_Transcript_188968.p1


Annotated TAIR IDAT5G16486.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:5383597-5384226 | Reverse length=209
E-Value5E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.9312735180979
Replicate 20.10712398171581
Replicate 31.0518399916601
Condition 2: 8 Hour
Replicate 10.62463941191952
Replicate 21.1408613184278
Replicate 31.2039333574747
Condition 3: 24 Hour
Replicate 11.171316695291
Replicate 21.4628488039669
Replicate 30.89337570150601


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_188968.p1 GENE.R_Transcript_188968~~R_Transcript_188968.p1 ORF type:complete len:196 (+),score=26.80,zf-RVT|PF13966.2|8e+03,zf-RVT|PF13966.2|1e+04,zf-RVT|PF13966.2|1.8e-16 R_Transcript_188968:3797-4384(+)
ATGGCATGGCACAAATTTTTCCAAGAGAAGAAATATGGGGGTGTTAATATTAAGGAAGTGCTAAACTGGAATAAATCCCTGTTAGTCAAATGGATCCTTAAAGTCCATAACAGGACTAACACACTCTGGGTGAATTGGGTGAATGTTTATTATCTAAGAGGCAATAGCATATGGGATGTCAAGGCAAATCAAGGTGATTCATGGGATTCATGGGCCTGGAAATCTCTATTGAGATGTAGGGATGATCTTCCATCCATTGTTGGAGGAATAAATGCAATTATTCAAGTGACACAACAGCAGAAGCAGGGGGAATCTATTACTTCAAGGGTCTATCAGATCTTCAAAGGGCATTCTGTGCAGGCCCTTTGGGTTAATACAGTGTGGGATGCCATTAATATTCCAAAGCATGTCATTATAACAGTGCTAGCTATTCATAATGCATTACCAACAATTGATAACATCACAAGAAGAGGTCTACAGCTAGTTAACTGGTGTATCTTATGCAAGCAACAACAGGAAACCAGAGATCATCTATTCTTTGGATGCAACTTCACTGATGCATTTAATTGGCAGCAGATTTTGCTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_188968.p1 GENE.R_Transcript_188968~~R_Transcript_188968.p1 ORF type:complete len:196 (+),score=26.80,zf-RVT|PF13966.2|8e+03,zf-RVT|PF13966.2|1e+04,zf-RVT|PF13966.2|1.8e-16 R_Transcript_188968:3797-4384(+)
MAWHKFFQEKKYGGVNIKEVLNWNKSLLVKWILKVHNRTNTLWVNWVNVYYLRGNSIWDVKANQGDSWDSWAWKSLLRCRDDLPSIVGGINAIIQVTQQQKQGESITSRVYQIFKGHSVQALWVNTVWDAINIPKHVIITVLAIHNALPTIDNITRRGLQLVNWCILCKQQQETRDHLFFGCNFTDAFNWQQILL*

Click here to download the sequence:
Link to NCBI Protein BLAST