Transcript Information: R_Transcript_189058.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value5E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33615029382539
Replicate 20.50267385895373
Replicate 30.88589592913297
Condition 2: 8 Hour
Replicate 10.36074939148796
Replicate 20.53534339582949
Replicate 30.66856761032733
Condition 3: 24 Hour
Replicate 10.29595699925217
Replicate 20.81234839375975
Replicate 30.28216193887345


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_189058.p1 GENE.R_Transcript_189058~~R_Transcript_189058.p1 ORF type:3prime_partial len:543 (+),score=47.83,rve|PF00665.22|2.2e-18,gag_pre-integrs|PF13976.2|2.9e+03,gag_pre-integrs|PF13976.2|1.1e-14 R_Transcript_189058:233-1858(+)
ATGGTTCCCAATTGGTTCATGCCACCATCCCGTTTTGCTCCTACCTGTGCTCCTTCCTTGCCGCCTGCCCCGCAACAACAAGGCATTCTTGGTGCTGCACCGCGTCCTGCCTACCCGACAGCAAACTTGGCTCAATTTGGGGTTCATGTACCTCCTTCAACCGCTGCGTCTACTGCCGCTGCACCCTATTACCAGCCCACATCTGATGTCTTAAATGCCTTCAACACTATGTCACTACATGAGCCACAAGATGCCTCATGGTATATGGATTCCGGTGCCACTGCACATCTGACTAATAATCCAGGTAATCTCTCTCATATTTTTAATTTTGGCATTAATTCATCTTCTCCTAATATGGTCACAGTTGCTAATGGAACCACAATCCCAATATCCCTCTCTGGCAGTCATGCCTTCTCCAGTATTACTCGCCCTCTCTATCTTAGTCATGTCTTGGTTACCCCCAACATACTTAAGAATCTCATCTCTGTTCGCAAATTTACCAAAGACAATAAATGTTCCATTGAGTTTGATCCTTCTGGTTTTTCTGTGAAGGACCTCCAGACACGTCAGACGTTGCTCAGATGTGATAGTGATGGCGACCTCTACCCTGTCCTGCCGTCTTCCATCCCTTGCTCATCTGCTCCTACTGCTCTCCTCACTACCACTTCCACTCTTTGGCATCAACGTTTGGGCCATCCTAGCAATCCTACTCTCAAGACTTTAGTTTCTAGAGGTTTTATCACATGTAATAAGGAGCCTACCTCCACTCTTTGTCATGCTTGTCAATTAGGAAAACATGTGAAATTTTCATTTCAATTGTCCACTACTAAATGTAATTCTCCCTTTGATGTCATTCATTCGGATTTGTGGACATCTCCCGTTGCTAGTAATTCAGGCATTAAATATTATTTAGTATTTCTTGATCAATTCTCTCATTTTGTTTGGGTGTACCCTTTACGTCATAAGAGTGATACATTCTCTAAATTTTTGCACTTTCGAGCTTATGTCAAAACACACTTCAACACTGAAATTAAGGCTTTCCAATGCGATCATGGAGGTGAATTTGATAATAACCCTATGCTTGACCTCTGTACCCAAAGTGGCATTTCAATGCGATTTTCTTGCCCTCACACTTCACAACAGAATGGAAAATCGGAACGTATCATTCGCACTCTAAATGATAAGGTCCGTACACTGTTGTTTCAGGCAAACCTTCCTTCAAAATATTGGGTGGAAGCCTTACATCATGCTGCCCATGTCCTCAACCTACTTCCCAGCTCCTCTATCCAGGGCAATACTCCCTACAAACTGTTGTTTGGTCGAGACCCCACCTATAGCCACTTGCGAGTTTTTGGCTCCCTGTGCTATCCTAATCTCACGTCTACAACCCCACATAAACTCTCCCCTCGTTCAGCTGCTTGTGTTTTCCTTGGTTATCCATCCAACCACCGCGGTTTTCGGTGCTTGGATTTAGAAACAAATAAAATCATAATCTCACGGCATGTGAAATTTGATGAACATACATTTCCTTTTGTCTCCAACAGACCTTCACCTAGTTATAGCTTCCTGGAAGATGGCTTAAACCCACAAGCACGACATAACATCCTGTATCCTCCTATTCAGCCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_189058.p1 GENE.R_Transcript_189058~~R_Transcript_189058.p1 ORF type:3prime_partial len:543 (+),score=47.83,rve|PF00665.22|2.2e-18,gag_pre-integrs|PF13976.2|2.9e+03,gag_pre-integrs|PF13976.2|1.1e-14 R_Transcript_189058:233-1858(+)
MVPNWFMPPSRFAPTCAPSLPPAPQQQGILGAAPRPAYPTANLAQFGVHVPPSTAASTAAAPYYQPTSDVLNAFNTMSLHEPQDASWYMDSGATAHLTNNPGNLSHIFNFGINSSSPNMVTVANGTTIPISLSGSHAFSSITRPLYLSHVLVTPNILKNLISVRKFTKDNKCSIEFDPSGFSVKDLQTRQTLLRCDSDGDLYPVLPSSIPCSSAPTALLTTTSTLWHQRLGHPSNPTLKTLVSRGFITCNKEPTSTLCHACQLGKHVKFSFQLSTTKCNSPFDVIHSDLWTSPVASNSGIKYYLVFLDQFSHFVWVYPLRHKSDTFSKFLHFRAYVKTHFNTEIKAFQCDHGGEFDNNPMLDLCTQSGISMRFSCPHTSQQNGKSERIIRTLNDKVRTLLFQANLPSKYWVEALHHAAHVLNLLPSSSIQGNTPYKLLFGRDPTYSHLRVFGSLCYPNLTSTTPHKLSPRSAACVFLGYPSNHRGFRCLDLETNKIIISRHVKFDEHTFPFVSNRPSPSYSFLEDGLNPQARHNILYPPIQP

Click here to download the sequence:
Link to NCBI Protein BLAST