Transcript Information: R_Transcript_189191.p1


Annotated TAIR IDAT3G19780.1
Annotated Gene NameLOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:6870238-6874677 | Forward length=1059
E-Value6E-131
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3440644594481
Replicate 22.2101368859261
Replicate 31.7843142969635
Condition 2: 8 Hour
Replicate 12.5774594681311
Replicate 21.4358039919077
Replicate 32.9233646578097
Condition 3: 24 Hour
Replicate 14.0357408495017
Replicate 23.9002984143337
Replicate 31.7510163749518


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_189191.p1 GENE.R_Transcript_189191~~R_Transcript_189191.p1 ORF type:complete len:950 (+),score=190.68,DUF179|PF02622.11|1.1e-12,Thioredoxin|PF00085.16|0.0083,Thioredoxin|PF00085.16|7.6 R_Transcript_189191:45-2894(+)
ATGGTAGTTTTAAATTTGTTCGCTCCGTTCGCTGCAGTGGTGATTATCCTGCATCTTACCATTCATGCTAGTATCGCTACAGTTGACTCCGAATTGAATGTCGATAATCAGTTCGAATGGCAAATACTTTCTGCAAAAAATTTCTCCCATCAGATCCGTCTTCACCCTCACATTCTCCTGATCGTCACTGAACCCTGTGGTTTGAATAAAGAAACTAATAGAACATTGGCATCTCGAAGGCAGAAAACCTTGAAGGGCATGGCAAACGAAGTGAACTGTGAGGTTGAAGATGGTTGTGTTGGAAGTCCATGGGTTGGAGAATTTAGCGCCGAAAATGCTACAGCTTTTTCAACAAATGAGGATGAGCAGCCTACATTTGGAATGTCCTGCAGCTTTGAAGAATATAAGAGATTTGAGTCTTTCTTTCCCAAGTTCGTGGCCGCCGCAAGGGCTATCTATCTTCCCCCTCAAAGGCAAAGATATGGTATTCTTTCTGAGAGGTTGTCGCTTTCACCTCTTGGTGTTGATGTGTCTGATGGATGGGCATTGATAATTTCCTATGCGGGATGTCCTGGATGCTTGAAGATTCTCAAGGCAGAGGATCATCTCCAGGAGGCTCTGGAGATTGATGATGTACCTGTATTGGAGTTGGAAGATGAAAGAAACGATCATGGACCTGCTTTACCTGTGGATAAACCATCGATACTACTCTTTGTGGATAGGATGTCGGACTCCTCTGACACTAGAAGAACAAGTCAGGAAGCACTTCATGCATTTAAAGAAGTAGCAATGCAGCATTGGAAGCCATGTCAGGCTGATGGGCAAAATAGTGGTTGTTCAAAAAGATCCTCACTCCACAAGTATCAAAAGCCAGCTATTATGGTGGGGAATGATAGATCATTGTTCTCATCTTTGCCTCACAAGAAGGATAAGATGTCTATCATGATCTTAAATGATGGAAAATATGTTACTTTCAATAATGAGGTCTTAAATTTACAAACTGGTTCCTTACACGAGGTTTTGACATATTTGCTAAAGAAGAAGAAGCCATCGAAGTTGAGCTCTCTTGTAAAGGAGGCAGGCTTCCAACTTCTTTCGAATGATGTAGACATAAAAATAGAAGATATGATGTCATCTCAGGATGAAAGCCAAGAGCAGGAATCAGAAGCAAGGTCAGTTCAAGACTCTGACAAAGATGTGGCTGACATGAATCAGGATGAAAGTGGTAAAATTTTAGCCATGGCAGAACGGGAGGAACACACTCAAGTTGTTAATAGTGAAGGTGCATATAATGGTGAAAAAAAGAGAGCTTCAAAAGACCTTGCAAGTAAAGAATCTGCTTTTGTGGGTTCTCATCAATCTCCCAATGTTCATGAAGTTGCTTCTACTGTAGACTTAGATTCTAAGGTACAAGCTTATGTACTAGCAGACAAGTCAGAAGGACTGAGCCATCCCTTTAGCAGTTTCACTGGTTCATTTTTCTTTTCAGATGGGAACTATGGGTTCCTTAAACGTGTCACTAATGACTGGGAAATCCCAACAATTGTGCTAATTGATCCGATCTCCCAGCAGCATTATGTCTTCGCGAAAGGAGCAAATTTCACTGTTTCTTCTATGTCTAGTTTTCTTGATGGGTTTCTTAATGGAATGCTTGTTCCTTATCAACGCTCTGGACCGCTGCACAACTCTGTTGAAAGGACACGTCCCCCATTTGTTAATTTGGATTTTCATGAACAAGATTCTATCCCTAGTGTTACAACCAAGACCTTTTCTGAATTAGTTCTTGGTTCTGACCAATCTGATGCTCAAAATGCAACCAATGCTTGGCATGAGGACGTACTGTTGCTTCTGAGTAGTAGCTGGTGTGGATTTTGTCAGAGAATGGAGTTAGTTGTTCGTGAAGTATATCGGGCCATAAAGGGCTACATGAACACAACCAAGTATGAGGCAACAAGCAAGGAGTGGTTATCTCATGATGACTTGAAGGATCTTATAACAAAGCTGCCGGTAGTCTATTCAATTGATTGTACTTTGAATGAGTGTGGCTGGATCCTTAATTCAGTGGGCCAAACTGAAGTTTATCCAACCCTACTCCTCTTTCCAGCAAAGAAGAAGACAGCTATCCCTTACAATGGAAACGTGATGGTCACAGACATTATCAAATTTATAGCAAACCATGGAAGTATTTCAAATCATCTTGCCAAGCAGAAGGGAGACATTTGGATTGATGGGGAAGAGATGGCTAATCAAGACAACAGGAAATATGAATTTATGAATGGAGGTAGCAAGGAATCTACTGATGAGCAGAATGTGGAGTCCCTTGTGAAAAATGGGAAGTTTAAAAATGAAGTCATATTGGAGCTGAATGAACCTGCCGGTCCACAAGGCTTGCCTGTTGGCTCCTTTCTTAGTGCCATGAATGATATTAGTCCATTCAGTAAAGCTAGAGTTCTTATAGTGAGTGCTGATCAAAATATGGGGTTTCAGGGGCTCATACTTAACAAGCCTATTAGCTGGGACTTCGTACTGGAATTTGAAAATGTTGAACTGCTAAAAGACGTTCCACTTTTTTGGGGGGGGCCAGTCGTACATGAAGGAATGCCTCTTGTTTGCTTAACCAAGAGCTCTATGAATGGTCAGTATCCACAAGTTCTTCCTGGTGTGTATTTTATTGATCAATTGGCAACAGTTAATGAAATAGAGCTAGTTAAGGCAGGAATTCGATCTGCGATGGATTATTGGTTCTTTTGGGGTTACTCTGGCTGGACATGGGACCAACTTTTTAATGAGATGGCTACTGGAGTGTGGAGCCTCCAAGATGGGAACATGGTAGACTTACAGTGGCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_189191.p1 GENE.R_Transcript_189191~~R_Transcript_189191.p1 ORF type:complete len:950 (+),score=190.68,DUF179|PF02622.11|1.1e-12,Thioredoxin|PF00085.16|0.0083,Thioredoxin|PF00085.16|7.6 R_Transcript_189191:45-2894(+)
MVVLNLFAPFAAVVIILHLTIHASIATVDSELNVDNQFEWQILSAKNFSHQIRLHPHILLIVTEPCGLNKETNRTLASRRQKTLKGMANEVNCEVEDGCVGSPWVGEFSAENATAFSTNEDEQPTFGMSCSFEEYKRFESFFPKFVAAARAIYLPPQRQRYGILSERLSLSPLGVDVSDGWALIISYAGCPGCLKILKAEDHLQEALEIDDVPVLELEDERNDHGPALPVDKPSILLFVDRMSDSSDTRRTSQEALHAFKEVAMQHWKPCQADGQNSGCSKRSSLHKYQKPAIMVGNDRSLFSSLPHKKDKMSIMILNDGKYVTFNNEVLNLQTGSLHEVLTYLLKKKKPSKLSSLVKEAGFQLLSNDVDIKIEDMMSSQDESQEQESEARSVQDSDKDVADMNQDESGKILAMAEREEHTQVVNSEGAYNGEKKRASKDLASKESAFVGSHQSPNVHEVASTVDLDSKVQAYVLADKSEGLSHPFSSFTGSFFFSDGNYGFLKRVTNDWEIPTIVLIDPISQQHYVFAKGANFTVSSMSSFLDGFLNGMLVPYQRSGPLHNSVERTRPPFVNLDFHEQDSIPSVTTKTFSELVLGSDQSDAQNATNAWHEDVLLLLSSSWCGFCQRMELVVREVYRAIKGYMNTTKYEATSKEWLSHDDLKDLITKLPVVYSIDCTLNECGWILNSVGQTEVYPTLLLFPAKKKTAIPYNGNVMVTDIIKFIANHGSISNHLAKQKGDIWIDGEEMANQDNRKYEFMNGGSKESTDEQNVESLVKNGKFKNEVILELNEPAGPQGLPVGSFLSAMNDISPFSKARVLIVSADQNMGFQGLILNKPISWDFVLEFENVELLKDVPLFWGGPVVHEGMPLVCLTKSSMNGQYPQVLPGVYFIDQLATVNEIELVKAGIRSAMDYWFFWGYSGWTWDQLFNEMATGVWSLQDGNMVDLQWP*

Click here to download the sequence:
Link to NCBI Protein BLAST