Transcript Information: R_Transcript_19063.p1


Annotated TAIR IDAT1G29940.1
Annotated Gene Namenuclear RNA polymerase A2
Annotated Gene Symbol(s)NRPA2
Annotation TypeOrtholog
Chromosome Positionchr1:10479322-10486670 | Reverse length=1178
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.134820484867
Replicate 27.6220666481557
Replicate 311.055075226642
Condition 2: 8 Hour
Replicate 18.9096149808042
Replicate 29.5778162254442
Replicate 313.363526733245
Condition 3: 24 Hour
Replicate 116.590374688723
Replicate 213.057311879239
Replicate 316.336878816344


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_19063.p1 GENE.R_Transcript_19063~~R_Transcript_19063.p1 ORF type:complete len:1179 (+),score=217.85,RNA_pol_Rpb2_6|PF00562.24|5.6e-107,RNA_pol_Rpb2_1|PF04563.11|3.1e-30,RNA_pol_Rpb2_3|PF04565.12|2.7e-26,RNA_pol_Rpb2_7|PF04560.16|1.7e+03,RNA_pol_Rpb2_7|PF04560.16|1.3e-22,RNA_pol_Rpa2_4|PF06883.8|1.4e-17,RNA_pol_Rpb2_2|PF04561.10|2.9e-11 R_Transcript_19063:743-4279(+)
ATGGCGAAAAACAAAGAACTAGACTTGGAGCCCTTAAGAGCTCTGTTTCAGCATCACATAGACTCCTTTGATCACTTAATTGAGTCTGGCTTAGAGTCCATGTTGAGCAACGTCAAGCCTATCGAGCTTCGCGATCCCTACAAAAACACCAAGCTTAGAATATTTATTGGAAAACCTCTTTTGTACCCTCCACAAAAGGAGGCTAGAAGGGGTTTACCAGCAAGGGCTCTTTACCCCTTTGAGTGTCGTCAAGCGAAGATATCGTATTCAGGGACGTTTATGGCTGAGGTTTGCTTTCAGTATAATGATGGACCTATTATTAGGGAACGATTCAATTTTGGACATTTTCCTGTCATGTTCAAGTCCAAGCTCTGCAACTTGAGGAATGCGTCCCCTGAAACACTAGTTTCACACAGAGAGGAGCCATTGGAAATGGGAGGATACTTCATTTTAAATGGGCTTGAGAGGCTTGTTCGGCTACTGATCATGCAAAAGCGCAACTATCCAATGAGCATGGTGCGAAGCTCATTTCGTGTTCGCAGGGAAGGTTACAGTGATAAAGCAGTTGTAATAAGATGTGTTCAGGAGGATCAATCGTCTGTTACTGTCAGACTGTATTATCTTAATAATGGAAGCGCCAGACTTGGCTTTTGGATACAAGGGAGGGAGTTCTTGCTTCCTGTGGGTGTTGTTTTGAAGGCACTTGTTGATACAACTGATCATGAAATATACGTGGCATTGACATGTTCGTATAACGAGAGATACGAGGGAGTTAAAGGTGCTATTGGCACACAGCTTGTTGGTGAAAGAGCAAAAATTATTCTTGATGAGTTGCACGGATTGTCCCTTTTGACTCGTCGTCAATGTATTGAGCACATAGGACAGTACTTTCATCCTGTCATGGATGGGCTGGAGAATGAAAGTTATTCAGTTGTTGGGGAAGCTGTGCTGAATGATTTCATATTTATCCACCTTGGCTCCAACAAGCACGACAAGTTCAATCTTCTAATATTCATGGTGCAGAAACTTTTTTCGCTGATAGATCAGACATCTGTCCCAGACAATCCAGATTCATTGCAAAATCAAGAAGTTCTGCAAGTTGGGCAGTTGATCTCTATTTATTTAAAGGATAAACTGCAGGAATGGCTTCAAAAATCAAGGAGCCTTCTGAACGATGAGATAAGCAAGCAAAGTGAACATTTTGATCTTGCAAACGTACAACAAGTCAAGAAGATGTTAGACAAAAATCCTTCAAGACAGATTGGTACTGCCATTGACAATATGTTGAAGACTGGGAGATTAGCTACGCGTTCAGGTCTGGACTTGCAGCAGAAAGCAGGCTTTGCTATTCAGGCTGATAGGCTCAATTTTATGCGTTTTCTTTCAAATTTTCGTGCTGTGCATCGAGGTTCGGCATTTGCTGGAGCTCGTACTACAAGTGTTCGGAAGCTTTTACCTGAGGCTTGGGGGTTTCTCTGTCCTGTGCACACACCTGATGGTGAGCCTTGTGGATTGCTGAACCATTTGACCTGTACATGCAGAATCACATCATACTTCGATTCCCAAGGAGTCCTAAAAAATTTCTTTAAAATGAAACTGTCTATCATTGATGTTTTGGTCAAATTGGGGATGAAGCCTTCATTACCAAAGCTTGTGCAAGCCGGCCCTCCTGAAGTTCTTTGTGTTCTTCTTGATGGAAGAGTGATTGGATCCGTATCCACTTTGGAAGTTGAGAAAGTTGTCAACCACTTACGAAGATTAAAATTGTCTGAAGTTCCTGCGATTTCTGATGATCTGGAAGTGGGCTACGTTCCTTTGAGCTTTGGTGGAGCATATCCTGGATTGTTCCTTTTCACAACTCCTTCAAGGTTTATTCGTCCAGTTAGAAACATCTCTATTCCTCCTGAGAATAATAACGATATTGAACTAATTGGACCATTTGAACAGGTTTATATGGAAATTAGATGTCCTGATGGTGGTGATGGAGGGAGGGGAAACAACACTCCTGCAACTCATGAGGAAATACATCCAACAGGGATACTGAGTGTCGTTGCTAATCTGACACCATGGTCTAATCACAACCAGAGCCCACGTAATATGTACCAATGTCAGATGGCAAAACAAACCATGGCCTTTTCATCTCAAGCAATTAACTTCCAAACTGATCAAAAGGGATACCATCTTCAGACACCACAAAGTCCAATTGTGCGCACAGAGTCCTATTCTACATATTGCATCGATGAATATCCTTCGGGCACCAATGCAATTGTAGCGGTGTTAGCATATACTGGTTATGATATGGAAGATGCAATGATTTTGAACAAATCTTCAGTTGAACATGGAATGTGCCACGCCAATATATATCAGACAGAAACTATTGACTTAACTGACGAAGGTGGCAGAAGAGCTCGTACAGAAAGAGCTTTTAAAAGAAGTACTCTTGATAAATCAACATGTTCTTTGATCGATGGGGATGGACTCCCTTACATTGGACAGGTACTACATCCAAATGACCCATACTGTACTATCACTAATAAGTTGAATAGTACAATGGAGACACGAAAATTGAAGGGTTCAGAACTGGCATTTGTTGATTCTGTAGTCATTGATGGAAAGCACAAGGCTATACCACTTGATGGGCATGGGTTTCAAAAGGTGAATATTCGGTTAAGGCGTCCAAGAAATCCTATAATTGGAGATAAATTTAGCAGTAGACATGGGCAGAAGGGTGTCTGCTCTCGGCTCTGGCCAGATATAGATATGCCATTTTCACACAGTACAGGGATGCGTCCAGATCTTATCATCAATCCACATGCGTTTCCTTCAAGGATGACAATTGCAATGCTTTTGGAGTCGATTGCTGCCAAGGGTGGCAGCTTAGATGGAAAGTTTGTTGACGCAACACCATTTTCAGACTCCTTCAAGAAGGCTGATGAAGAGCATGGCTCTGAGTCAAGCACACTTGTTGATGACCTTGGTTCCATGTTAACTACTCATGGATTTAATAAATATGGTACAGAAGTTTTATATAGTGGAGTCTATGGAACAGAACTAACATGTGAAATCTTTATTGGGCCTGTTTATTATCAGCGATTAAGGCATATGGTATCGGACAAATTTCAGGTTCGTTCAACTGGAACAGTTGATCAACTTACACGGCAGCCTATCAAAGGTAGAAAGCGTGGTGGAGGTATCCGTTTCGGTGAAATGGAAAGAGATGCCATGCTTGCTCATGGCGCTGCATATCTACTGCATGACAGGCTACATAAAAGCTCTGATTATCACATTGCCGATGTCTGTTCCCTTTGTGGAAGCATCCTCTCATCTTCAATGATTGAACCACACAAGCAGCTAGTGCAAAGAGTGGGAGGGCTACCTCCTGCTAGGGCTTCTAAAAAGGTATTCTGCCACTCTTGCCAGACTAGCAGAGGAATGGAAACGGTTGCCATGCCATATGTTTTCAGATATCTTGCTGCAGAATTAGCAGCAATGAATATTAAAATGTCCCTCCAGCTGAGTAATGCCACAGGAGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_19063.p1 GENE.R_Transcript_19063~~R_Transcript_19063.p1 ORF type:complete len:1179 (+),score=217.85,RNA_pol_Rpb2_6|PF00562.24|5.6e-107,RNA_pol_Rpb2_1|PF04563.11|3.1e-30,RNA_pol_Rpb2_3|PF04565.12|2.7e-26,RNA_pol_Rpb2_7|PF04560.16|1.7e+03,RNA_pol_Rpb2_7|PF04560.16|1.3e-22,RNA_pol_Rpa2_4|PF06883.8|1.4e-17,RNA_pol_Rpb2_2|PF04561.10|2.9e-11 R_Transcript_19063:743-4279(+)
MAKNKELDLEPLRALFQHHIDSFDHLIESGLESMLSNVKPIELRDPYKNTKLRIFIGKPLLYPPQKEARRGLPARALYPFECRQAKISYSGTFMAEVCFQYNDGPIIRERFNFGHFPVMFKSKLCNLRNASPETLVSHREEPLEMGGYFILNGLERLVRLLIMQKRNYPMSMVRSSFRVRREGYSDKAVVIRCVQEDQSSVTVRLYYLNNGSARLGFWIQGREFLLPVGVVLKALVDTTDHEIYVALTCSYNERYEGVKGAIGTQLVGERAKIILDELHGLSLLTRRQCIEHIGQYFHPVMDGLENESYSVVGEAVLNDFIFIHLGSNKHDKFNLLIFMVQKLFSLIDQTSVPDNPDSLQNQEVLQVGQLISIYLKDKLQEWLQKSRSLLNDEISKQSEHFDLANVQQVKKMLDKNPSRQIGTAIDNMLKTGRLATRSGLDLQQKAGFAIQADRLNFMRFLSNFRAVHRGSAFAGARTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHLTCTCRITSYFDSQGVLKNFFKMKLSIIDVLVKLGMKPSLPKLVQAGPPEVLCVLLDGRVIGSVSTLEVEKVVNHLRRLKLSEVPAISDDLEVGYVPLSFGGAYPGLFLFTTPSRFIRPVRNISIPPENNNDIELIGPFEQVYMEIRCPDGGDGGRGNNTPATHEEIHPTGILSVVANLTPWSNHNQSPRNMYQCQMAKQTMAFSSQAINFQTDQKGYHLQTPQSPIVRTESYSTYCIDEYPSGTNAIVAVLAYTGYDMEDAMILNKSSVEHGMCHANIYQTETIDLTDEGGRRARTERAFKRSTLDKSTCSLIDGDGLPYIGQVLHPNDPYCTITNKLNSTMETRKLKGSELAFVDSVVIDGKHKAIPLDGHGFQKVNIRLRRPRNPIIGDKFSSRHGQKGVCSRLWPDIDMPFSHSTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLDGKFVDATPFSDSFKKADEEHGSESSTLVDDLGSMLTTHGFNKYGTEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQLTRQPIKGRKRGGGIRFGEMERDAMLAHGAAYLLHDRLHKSSDYHIADVCSLCGSILSSSMIEPHKQLVQRVGGLPPARASKKVFCHSCQTSRGMETVAMPYVFRYLAAELAAMNIKMSLQLSNATGV*

Click here to download the sequence:
Link to NCBI Protein BLAST