Transcript Information: R_Transcript_190915.p1


Annotated TAIR IDAT5G01660.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:244504-248442 | Reverse length=656
E-Value9E-70
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8252960954719
Replicate 21.1725206725985
Replicate 31.4874504932566
Condition 2: 8 Hour
Replicate 12.3849868455109
Replicate 21.5391256332245
Replicate 32.1687638663319
Condition 3: 24 Hour
Replicate 12.6237493974519
Replicate 21.2316573146686
Replicate 33.0415381837637


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_190915.p1 GENE.R_Transcript_190915~~R_Transcript_190915.p1 ORF type:complete len:770 (+),score=159.53,Kelch_1|PF01344.21|0.0078,Kelch_1|PF01344.21|9.1e-10,Kelch_1|PF01344.21|0.00011,Kelch_1|PF01344.21|3.6e-11,Kelch_1|PF01344.21|2.5e-08,Kelch_1|PF01344.21|8.9e-06,Kelch_1|PF01344.21|5.1e+03,Dev_Cell_Death|PF10539.5|2.9e-49,Kelch_6|PF13964.2|9.3,Kelch_6|PF13964.2|3.4e-07,Kelch_6|PF13964.2|65,Kelch_6|PF13964.2|0.00013,Kelch_6|PF13964.2|0.15,Kelch_6|PF13964.2|5.1,Kelch_2|PF07646.11|26,Kelch_2|PF07646.11|9.7,Kelch_2|PF07646.11|3.2e+02,Kelch_2|PF07646.11|2.7e-05,Kelch_2|PF07646.11|0.0011,Kelch_2|PF07646.11|5.6,Kelch_4|PF13418.2|5e+02,Kelch_4|PF13418.2|0.097,Kelch_4|PF13418.2|3.7,Kelch_4|PF13418.2|0.016,Kelch_4|PF13418.2|0.082,Kelch_4|PF13418.2|2.2,Kelch_3|PF13415.2|64,Kelch_3|PF13415.2|1.1,Kelch_3|PF13415.2|0.61,Kelch_3|PF13415.2|5.2e-06,Kelch_3|PF13415.2|1.2e+03,Kelch_5|PF13854.2|4.4e+02,Kelch_5|PF13854.2|9.1e+02,Kelch_5|PF13854.2|11,Kelch_5|PF13854.2|14,Kelch_5|PF13854.2|0.013,Kelch_5|PF13854.2|85 R_Transcript_190915:285-2594(+)
ATGGGCGCAGGTAGGAAAACAGAAACAATAGTTCTCCAGAAGAGGCCTTCCCCTCAATGGCATCCAAATAATAATCCTCCAACTGCTAGGAATCTGGGGAAAAACCGACTTGCTGGTGTTATTTTTGGATGCAAACATTCCACTTACAAGGAGTGCATTTTTAAGCAGTTGTTTGGTTTACCAGCTGGACATTTTCAATATGTGCAATATGTTACTCAGGGTATGCCATTATTCCTATTCAACTATAGTGACAGGAAGCTTCATGGCTTCTTTGAGGCCATATCTGCTGGACAAATGGAAATCAATCAGTTTGCATGGACAACAGACAGTCAAGAAAAGACACCCTTTCCTGCACAGGTTCGAGTGAAAATCCGAATGCAGTGCCAACCTTTAACTGAGGACCAGTATCAACCCATCTTGGCGGATAATTATTCTCCACATGAACCTAATCATTTTTGGTTTGAGCTAGACAAATCTCAGACTGAAGAGCTGATCTCCATATTCTCAGCTTGTCCAGTTAGACAAAGTGCATCAACCCTGCACCCAGCAGCAAAGTGGGGCACGCTATTCAGACAATCATATGCTGCAGCAACTCATCAGGATTGCAGCAAAGCTGATTCGCAGTTGAGATCCACTTGCAATTTCATAGGAAACGATAGAGGGAAAAAAAAGTTGGAAGCTCCTCCAGGCGAGGATGCACCTGAGATTGTGAATGTCACTTCTTCCTGTCAAGGGAAGTCATGGAGTTCTTTGTTTAAACCTGGACCAGCTGAAGAGCTAAAAGCTGCAGGCACAGGACGTGATGTTCATGACCAAGATCTCCGAGTACCCTATTCAGAAGTTGCTGGCTTTTCTGGTACAGCCAATGTAATTACCACTCAGACAGAAAATTCAGACAAATTTGCGGTTGTTGCTGATGTATTCAATGATGAGCAAGATACAAAAACAGCGGCTTTAGATGAGGATTGCTCTCATGAATCAAACATGGAGTGGGCTTCCTCTTTTCCTCACTTGGATGGTCTGATTGAGCTAGTAGAAGAGCCTTGGGATGCAACCATATGCGAGGAAGAACATGTGACACCGAAACCATGCAGTGAAGGATCTAATATTTCTGCAATGTCAGGAATTCCAGATTTGGAGGATAATGCTGCTCATTTTACTCCTGTGCTCAATGAAGCAAATGCAGAAGCCACCTTGTTTTCTGATGTTATGATGTCAGAGATGAATTCTTTAGATTTTCAGACTATTCTCACAAAGTTGATTCAAACAATTGGGGAGATGAAATCATTTCAGTGCACTCAAGCACTGAAGATCCAGACCTTGGAGCAGGAATTGGTGGAATCAAACAGAAAAATTGTCGAATTGAAATACAATTGGGGAACATATGGGCTGCCCATGTCTTCTCTTTCACTTGGCTGTGTCAAGGAGACTGATTCAAAAAAATACTTTGAGGAGTTTACTGATTCTATATTTATAGTGGGTGGCTTCAATGGGTCCTCTTGGTTGCCAACTTTGGAATGTTACTCACCGTATAAGGATAGCATGCGATCACTGAAATCGATGACTTCTGTTCGATCGTATGCTTCTTCGGTGATCTTTGGTGACGGGCTCTACGTTTTAGGTGGTGGATATGGTACATCCTGGTATAGCACAGTTGAGTCTTACAACCTGAAAAGCCATCAGTGGGTTAGTTGTCCTTCGTTGAATAGGAAGAAAGGGAGTCTAGCAGCTGCTTGTTTAAGCGAGAAGATCTTTGCAATTGGAGGTGGGAACACAACTGATTGTTTTTCTGAAGTAGAGATGCTTGATCTGAATTTAGGGAAGTGGATATTGACCAGGTCAATGGGGAGCAAGCGTTTTGCCTCAGCTGCAGTGGTAATGGATGGTGTGCTGTATGTAGGGGGTGGATATGATGGGCAGGAATACCTAAAGTCCATGGAAAGACTTGATCCTCGTGAATATTCATGGACTCCACTGAAGAGTATGAGCACACCGAGAGGATGCCACTCTTTCACTGTGCTGAATGAAAAGCTGTATGCTATCGGTGGGTATGATGGATCTCAGATGGTCCCAACTGTTGAAGTGTTTGAACCTCGTGTTGGTTCTTGGATGATGTCAGAGCCAATGAAATATGCCAGGGGTTATATGGGTGCTGTTACGCTTGGAAATAGAATCTTTGCACTGGGTGGAATCCAGGAGAATGAAGAAATCTTAGACACAGTGGAGTGTTATTCTGAAGGTGAGGGGTGGCGATTGATGGACCTCAAATGTATGGAGAAAAGATGCTTCTTCTCCGCTGTTGTGGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_190915.p1 GENE.R_Transcript_190915~~R_Transcript_190915.p1 ORF type:complete len:770 (+),score=159.53,Kelch_1|PF01344.21|0.0078,Kelch_1|PF01344.21|9.1e-10,Kelch_1|PF01344.21|0.00011,Kelch_1|PF01344.21|3.6e-11,Kelch_1|PF01344.21|2.5e-08,Kelch_1|PF01344.21|8.9e-06,Kelch_1|PF01344.21|5.1e+03,Dev_Cell_Death|PF10539.5|2.9e-49,Kelch_6|PF13964.2|9.3,Kelch_6|PF13964.2|3.4e-07,Kelch_6|PF13964.2|65,Kelch_6|PF13964.2|0.00013,Kelch_6|PF13964.2|0.15,Kelch_6|PF13964.2|5.1,Kelch_2|PF07646.11|26,Kelch_2|PF07646.11|9.7,Kelch_2|PF07646.11|3.2e+02,Kelch_2|PF07646.11|2.7e-05,Kelch_2|PF07646.11|0.0011,Kelch_2|PF07646.11|5.6,Kelch_4|PF13418.2|5e+02,Kelch_4|PF13418.2|0.097,Kelch_4|PF13418.2|3.7,Kelch_4|PF13418.2|0.016,Kelch_4|PF13418.2|0.082,Kelch_4|PF13418.2|2.2,Kelch_3|PF13415.2|64,Kelch_3|PF13415.2|1.1,Kelch_3|PF13415.2|0.61,Kelch_3|PF13415.2|5.2e-06,Kelch_3|PF13415.2|1.2e+03,Kelch_5|PF13854.2|4.4e+02,Kelch_5|PF13854.2|9.1e+02,Kelch_5|PF13854.2|11,Kelch_5|PF13854.2|14,Kelch_5|PF13854.2|0.013,Kelch_5|PF13854.2|85 R_Transcript_190915:285-2594(+)
MGAGRKTETIVLQKRPSPQWHPNNNPPTARNLGKNRLAGVIFGCKHSTYKECIFKQLFGLPAGHFQYVQYVTQGMPLFLFNYSDRKLHGFFEAISAGQMEINQFAWTTDSQEKTPFPAQVRVKIRMQCQPLTEDQYQPILADNYSPHEPNHFWFELDKSQTEELISIFSACPVRQSASTLHPAAKWGTLFRQSYAAATHQDCSKADSQLRSTCNFIGNDRGKKKLEAPPGEDAPEIVNVTSSCQGKSWSSLFKPGPAEELKAAGTGRDVHDQDLRVPYSEVAGFSGTANVITTQTENSDKFAVVADVFNDEQDTKTAALDEDCSHESNMEWASSFPHLDGLIELVEEPWDATICEEEHVTPKPCSEGSNISAMSGIPDLEDNAAHFTPVLNEANAEATLFSDVMMSEMNSLDFQTILTKLIQTIGEMKSFQCTQALKIQTLEQELVESNRKIVELKYNWGTYGLPMSSLSLGCVKETDSKKYFEEFTDSIFIVGGFNGSSWLPTLECYSPYKDSMRSLKSMTSVRSYASSVIFGDGLYVLGGGYGTSWYSTVESYNLKSHQWVSCPSLNRKKGSLAAACLSEKIFAIGGGNTTDCFSEVEMLDLNLGKWILTRSMGSKRFASAAVVMDGVLYVGGGYDGQEYLKSMERLDPREYSWTPLKSMSTPRGCHSFTVLNEKLYAIGGYDGSQMVPTVEVFEPRVGSWMMSEPMKYARGYMGAVTLGNRIFALGGIQENEEILDTVECYSEGEGWRLMDLKCMEKRCFFSAVVV*

Click here to download the sequence:
Link to NCBI Protein BLAST