Transcript Information: R_Transcript_192177.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.26842589639292
Replicate 20.46315368565363
Replicate 30.16843189408936
Condition 2: 8 Hour
Replicate 10.36008624922419
Replicate 20
Replicate 30.66733862574952
Condition 3: 24 Hour
Replicate 10
Replicate 20.32434204250849
Replicate 30.32187801010143


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_192177.p1 GENE.R_Transcript_192177~~R_Transcript_192177.p1 ORF type:complete len:136 (+),score=25.88,UBN2_3|PF14244.2|1e-30,Retrotrans_gag|PF03732.13|3.5e+03,Retrotrans_gag|PF03732.13|1.4e-07 R_Transcript_192177:473-880(+)
ATGGAGATAGCTTTGGCGACTAAAAGGAAACTTGGATTTGTGAAGGGAGCTATGGTGAGAAATGCTGATGATCCAATAAAAGCTGATCAGTGGGACACTTGCAACTCTATGGTAATTGCCTGGCTTCTTAACTCAATGATTGAATCTGTTACACGCTCAGTTTTGTACATAGACTCTGCTTGTGCTATGTGGTTGCATCTTGAGAATAGATTTTCTGTGAGTAATGGAGCTAGAAAATACAAAATCAATAAAGAGATTTATGATTTGAGGCAGAATGGAACTAGTATCAATGACTTCTATACTAAGATGAGATGTCTTTGGGAAGAGTTAGACTCTATGAGTAATTTGCCAAAGATTACTGAATTTACTGAAGAAATTAAAGTTTTCCTCAAAGCATTGGATCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_192177.p1 GENE.R_Transcript_192177~~R_Transcript_192177.p1 ORF type:complete len:136 (+),score=25.88,UBN2_3|PF14244.2|1e-30,Retrotrans_gag|PF03732.13|3.5e+03,Retrotrans_gag|PF03732.13|1.4e-07 R_Transcript_192177:473-880(+)
MEIALATKRKLGFVKGAMVRNADDPIKADQWDTCNSMVIAWLLNSMIESVTRSVLYIDSACAMWLHLENRFSVSNGARKYKINKEIYDLRQNGTSINDFYTKMRCLWEELDSMSNLPKITEFTEEIKVFLKALDQ*

Click here to download the sequence:
Link to NCBI Protein BLAST