Transcript Information: R_Transcript_193477.p1


Annotated TAIR IDAT3G62140.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23007277-23008626 | Forward length=214
E-Value5.6E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7855367311832
Replicate 26.9362778160985
Replicate 36.8515688345634
Condition 2: 8 Hour
Replicate 15.4655948542958
Replicate 26.0893472871086
Replicate 36.9689219346129
Condition 3: 24 Hour
Replicate 17.1743147586575
Replicate 26.5968854717352
Replicate 35.3742132043721


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_193477.p1 GENE.R_Transcript_193477~~R_Transcript_193477.p1 ORF type:complete len:224 (-),score=73.08,Nefa_Nip30_N|PF10187.5|1.3e-15 R_Transcript_193477:145-816(-)
ATGGCCGAGGATATTCCTCCTCCCATCAGATTGATGAATTTCGTGTCTCAGGAACAGTTGGATGAAGCAAAGAGAACCAGGGGTGAAAGAGTTGAGGACGGCACTGCTCAGAGAGATCGTCCTCTCTATGAGATTTTGCAGGAGAACAAGGACAAGCGAGATGCTGAGTTCAATGAACGATTCAAGCATCGCCCTCCCAAGGCTTTGGATGAGGACGAGACTGAATTCCTGGAAAAATTGGAGATGTCAAGGAAAGAATATGAACAACATATTGCAGATGAAGAAGCTCAAGAATTAAGGAGATTCCAGGCAGCAGTGGCGGCACAATCTATGATAATGCACGAGGTGAAAGAAACTCCTTCTGTTTCTGATGTCCAGGAGAAGAGGACAGTGGGAAAGAAGAATAAGCCTTTTGAGCCATTGGGTATGATTATAAAAGTGAAGCCATCAGCCAAGAAAACTAGAGTGGATCCATCACCAGTGCAGCCGTCTGGAGCTGTGGTAAAGCATGCTGTGGAGACTCAACAATGTTCAAGCCCTTCGGAAATTCCAAGTGGTGGTAGAGAGGTTTGTCAGGAACCATTAAAGAATTCTGACAGTAATAGGGAAAATACTCATAATGTCGCAATGACTGGTCTCGTTTCATACAGTGATGAAAGTGATGGTGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_193477.p1 GENE.R_Transcript_193477~~R_Transcript_193477.p1 ORF type:complete len:224 (-),score=73.08,Nefa_Nip30_N|PF10187.5|1.3e-15 R_Transcript_193477:145-816(-)
MAEDIPPPIRLMNFVSQEQLDEAKRTRGERVEDGTAQRDRPLYEILQENKDKRDAEFNERFKHRPPKALDEDETEFLEKLEMSRKEYEQHIADEEAQELRRFQAAVAAQSMIMHEVKETPSVSDVQEKRTVGKKNKPFEPLGMIIKVKPSAKKTRVDPSPVQPSGAVVKHAVETQQCSSPSEIPSGGREVCQEPLKNSDSNRENTHNVAMTGLVSYSDESDGD*

Click here to download the sequence:
Link to NCBI Protein BLAST