Transcript Information: R_Transcript_193738.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.21859833478705
Replicate 20.25145269959638
Replicate 30.13716609339013
Condition 2: 8 Hour
Replicate 10
Replicate 20.26779499211001
Replicate 30.32607683749198
Condition 3: 24 Hour
Replicate 10.27494379913418
Replicate 20
Replicate 30.78638459952924


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_193738.p1 GENE.R_Transcript_193738~~R_Transcript_193738.p1 ORF type:complete len:167 (+),score=16.46 R_Transcript_193738:141-641(+)
ATGGATATGGATATTGTTTCACATTCGTCAACTAGCAACTCTAGCTCTAAGTCAGATGATGATTTTGATATGGATATGCTGTTGTTAATATTTTTGAAGGAGTATGCACATGCTTTTATTGATAGAGTTCCTTGTAGGACATCTATGCTCAGTGGGAAAGAATATATCAGAGAGATTTTGTGTGGAAATCCTATACAGTGCTATGAATCATTTAGGATGAAACCCCACGTGTTTTTAAATTTGTGTGATAAGTTGAAAATGTCACATCTATTACAAGATTCAAAGAACGTGAGTGTAGAAGAAGGATTAGCTATGGGTTTGAGGATCTTATGTCATGGCACAAGGCAAAGAATGATTTGCGATCGATTTCAACATTCACTTGGGACAACACATGCATGGTTTAAAAGGGCTTTGACAGCATTAAAGGCTTTTGGTACTACTGTAATCAAACCAATAGATCGAGGTGAAGTTCAACAAGAAATTCTAGCAAACCCGAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_193738.p1 GENE.R_Transcript_193738~~R_Transcript_193738.p1 ORF type:complete len:167 (+),score=16.46 R_Transcript_193738:141-641(+)
MDMDIVSHSSTSNSSSKSDDDFDMDMLLLIFLKEYAHAFIDRVPCRTSMLSGKEYIREILCGNPIQCYESFRMKPHVFLNLCDKLKMSHLLQDSKNVSVEEGLAMGLRILCHGTRQRMICDRFQHSLGTTHAWFKRALTALKAFGTTVIKPIDRGEVQQEILANPK*

Click here to download the sequence:
Link to NCBI Protein BLAST