Transcript Information: R_Transcript_193892.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.21871146266977
Replicate 30
Condition 2: 8 Hour
Replicate 10.25506109320047
Replicate 20.23292585251235
Replicate 30.1890792772957
Condition 3: 24 Hour
Replicate 10.71743147586575
Replicate 20.45948456022036
Replicate 30.22799692382185


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_193892.p3 GENE.R_Transcript_193892~~R_Transcript_193892.p3 ORF type:3prime_partial len:96 (+),score=13.95,UBN2_3|PF14244.2|5.5e-27 R_Transcript_193892:567-851(+)
ATGAACTACATATCTTGGAAAAGAAATATGGAGATTGCCTTGGCTACAAAAAGGAAATTAGGATTTGTGAAGGGAACTGTACTGAGAAGTGATGATGATACAACAAAGGCTGATCAATGGGACACATGTAATTCTATGGTAATTGCTTGGCTCTTTAACTCTATGATTGAATCAATCAGACATTCTGTTTTGTATATAGAGTTTGCCTTTACTATGTGGATGCATCTTGAGAATCGTTTTACTGTAAGCAATGGAGCTCGAAAGTACAAAATCAATAGAGATATA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_193892.p3 GENE.R_Transcript_193892~~R_Transcript_193892.p3 ORF type:3prime_partial len:96 (+),score=13.95,UBN2_3|PF14244.2|5.5e-27 R_Transcript_193892:567-851(+)
MNYISWKRNMEIALATKRKLGFVKGTVLRSDDDTTKADQWDTCNSMVIAWLFNSMIESIRHSVLYIEFAFTMWMHLENRFTVSNGARKYKINRDI

Click here to download the sequence:
Link to NCBI Protein BLAST