Transcript Information: R_Transcript_194117.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value8E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.8288721774841
Replicate 21.7819738360696
Replicate 32.1131676749218
Condition 2: 8 Hour
Replicate 11.1745986875062
Replicate 21.402712145019
Replicate 32.0763835027011
Condition 3: 24 Hour
Replicate 11.6943031164357
Replicate 22.116002697989
Replicate 31.6153287591806


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_194117.p1 GENE.R_Transcript_194117~~R_Transcript_194117.p1 ORF type:complete len:271 (+),score=32.58,UBN2_3|PF14244.2|4.9e-15,UBN2|PF14223.2|2.3e-08 R_Transcript_194117:83-895(+)
ATGATGGATGAAATCCCGCCCTCCACCACCGTGCAGACCACCATCGTTGACCAGCCCTACCCACAAACACCGCCATCTGTCTCTACAGTAGTCAGTCCCCCGCCGGGTTATTCTTTCCCCCCTCCACCGCCACAAATTCCCAGCTCACCTGGGCTCACCACTGCTGCCCCAATTCAAGATGGCATGTTCAACTCACCACCTCCCCCATACGGCCCTTTCAATCCTAATGTGATAAATTTGGTCACAGTCAAACTTGGATCTAAGGATGATTACCCCATTTGGAGAACACAATTTTCTGGCCTCTTGGAGTCTCAACGCCTCATGGGATACGTTGATGGCTCTATTCCCACTCCTCCCATTGATAATCCGGACTATGCCTCGTGGCTGCACATTGATAAAAATATTCGAATTTGGCTTCTTGCTACTCTCTCTCGTGAGATATTGGACAAGGTACACTATCTCGATCACTCATATAAAATTTGGTCTCGACTTGAATCTCTTTTCTTTACTGGTATGGATCGAACTACTTTGCCTGGAATTGAGAAACAATCGGTTGATTCCATTGATTATTATTTGCGTCGATGTAAAATGTTGGCTAATGATCATTTTGAGGCTACCGGTAATCGTTTATTTGATGGAGAACTAATTAAATGGGCAATTTCTGGCCTTGATGAGGAGTACGATGCTTTTGTCGCTGATATTAATCAATCTCTGGAAACTCTCAAGTTTGAGCAATTCCGTCGCCGCCTTATTGCACATGAGCAGCGTCTCAAACACAGGAAGGCTCCTAATTTTTTTAAATTTTGTCGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_194117.p1 GENE.R_Transcript_194117~~R_Transcript_194117.p1 ORF type:complete len:271 (+),score=32.58,UBN2_3|PF14244.2|4.9e-15,UBN2|PF14223.2|2.3e-08 R_Transcript_194117:83-895(+)
MMDEIPPSTTVQTTIVDQPYPQTPPSVSTVVSPPPGYSFPPPPPQIPSSPGLTTAAPIQDGMFNSPPPPYGPFNPNVINLVTVKLGSKDDYPIWRTQFSGLLESQRLMGYVDGSIPTPPIDNPDYASWLHIDKNIRIWLLATLSREILDKVHYLDHSYKIWSRLESLFFTGMDRTTLPGIEKQSVDSIDYYLRRCKMLANDHFEATGNRLFDGELIKWAISGLDEEYDAFVADINQSLETLKFEQFRRRLIAHEQRLKHRKAPNFFKFCR*

Click here to download the sequence:
Link to NCBI Protein BLAST