Transcript Information: R_Transcript_194118.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value5E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6336557136753
Replicate 21.2648373744758
Replicate 31.4587767488083
Condition 2: 8 Hour
Replicate 11.2643303759335
Replicate 21.1930935233679
Replicate 31.4683746973463
Condition 3: 24 Hour
Replicate 11.3830004354039
Replicate 20.60737373881108
Replicate 31.0548291415372


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_194118.p1 GENE.R_Transcript_194118~~R_Transcript_194118.p1 ORF type:complete len:581 (+),score=65.03,UBN2|PF14223.2|3.6e-13,UBN2_3|PF14244.2|8.6e-11,UBN2_3|PF14244.2|7e+03,UBN2_2|PF14227.2|7.9e-07,UBN2_2|PF14227.2|2.6e+03 R_Transcript_194118:83-1825(+)
ATGATGGATGAAATCCCGCCCTCCACCACCGTGCAGACCACCATCGTTGACCAGCCCTACCCACAAACACCGCCATCTGTCTCTACAGTAGTCAGTCCCCCGCCGGGTTATTCTTTCCCCCCTCCACCGCCACAAATTCCCAGCTCACCTGGGCTCACCACTGCTGCCCCAATTCAAGATGGCATGTTCAACTCACCACCTCCCCCATACGGCCCTTTCAATCCTAATGTGATAAATTTGGTCACAGTCAAACTTGGATCTAAGGATGATTACCCCATTTGGAGAACACAATTTTCTGGCCTCTTGGAGTCTCAACGCCTCATGGGATACGTTGATGGCTCTATTCCAACTCCTCCGGCTACTATCAATGATCATCATGGTTGTCCCATTGATAATCCGGACTATGCCTCGTGGCTGCACATTGATAAAAATATTCGAATTTGGCTTCTTGCTACTCTCTCTCGCAACATATTGTTTGAGGTACATTATCTTGTTCACTCATATCAAATTTGGTCTCGACTTGAATTTCGTTTCGAAGATAGTTTGGCTCGGTCTTTAAAACGTACTTTTAATGGAATTTACCAAAAGTCATATAAGTCCATTGAAGATTATTTGCGTAAAATCAAAGATGCTGCTGATGACTTGGAGGCTGTCGGTTATCATGTATCTGATCGACACCTAATTAATCGTGTAATTTCTGGCCTTGATGAGTACTACGGTGTTTTTGCCACTGATATTGATCGATCTTGGGACACTCTCACTTTTAATCAATTGCGTTGGCGCCTTATTTCACATGAGCAGCATCTCAAACACATGAAGGCTCGTAATAATGCTCGCGGACGAGGAGGAGGTGACCGTCGCCTTTCTGCATCGAATACCGCTCAAAATCAGCCCTCTACGACCCGCAATTCTCACTCTTCTGGAAGGACCAATAATGATGATGTTGAGCAGGAGGAAGAGGAAAGGGATCATAAAATGAGGAATATGGAGTTGGTGAGAGCCGGGTATAAAGATGATTGGAAGCGTGCATTGGCGATAATGAGAAAGGATCCTGCAGCTCTCATAGCCACCACCACTAATATCGCCATGGCAAGGTGTCACGACGAAGATGCCCTGAAGGAGTTAATAGAGTTGATCTATAACAAGTACGATTCCGAAGAGGATATTATAAAAAGACTAAGTGTGGCAACTTGTACCAACAACTTTGATGTTGTCAAAATGTTTCTCAACAACAATACACTGGTAATAAAAGGGGAGACTCTCCTCCACCTATCTGTCCAAGCAACCAAATGTGGGAATAAGGAAATTCTCGAATATTTTTGGTACAAGGCCAAAATCCATGACAAAGAGGCCTGCTTGGTTAAAGACAATTTTGAAGTCCTTGGCCTTGTTGAGTATACTATTAAAGCTGGCCTTATCGGACATGCTTATCATGTCATCAAAAACAGAGTAGAAGAGAAGGATATTCCGGAGTTGAAGAGCTTCTGGGAAATGATTTTCCAAGGACTGGCTGAAAAGCCCGAGGTGTTTCGGAGTGGAAGTAAACTCGGACCAATTGAAGGGTTAATCTATCGCTTGATTCCGGCCAACATTGAAGATACGCCTTCATACAGCATCGGGAAATTTACTAAAGAGAACGTCTTATACAATACCGTAGGAAGCATGCAAAGCAGAAGACAACGATGGCGTTGGAACTTCATAAAAACTCTAGGTAATCATGCACCTACCCGGCCGTTTAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_194118.p1 GENE.R_Transcript_194118~~R_Transcript_194118.p1 ORF type:complete len:581 (+),score=65.03,UBN2|PF14223.2|3.6e-13,UBN2_3|PF14244.2|8.6e-11,UBN2_3|PF14244.2|7e+03,UBN2_2|PF14227.2|7.9e-07,UBN2_2|PF14227.2|2.6e+03 R_Transcript_194118:83-1825(+)
MMDEIPPSTTVQTTIVDQPYPQTPPSVSTVVSPPPGYSFPPPPPQIPSSPGLTTAAPIQDGMFNSPPPPYGPFNPNVINLVTVKLGSKDDYPIWRTQFSGLLESQRLMGYVDGSIPTPPATINDHHGCPIDNPDYASWLHIDKNIRIWLLATLSRNILFEVHYLVHSYQIWSRLEFRFEDSLARSLKRTFNGIYQKSYKSIEDYLRKIKDAADDLEAVGYHVSDRHLINRVISGLDEYYGVFATDIDRSWDTLTFNQLRWRLISHEQHLKHMKARNNARGRGGGDRRLSASNTAQNQPSTTRNSHSSGRTNNDDVEQEEEERDHKMRNMELVRAGYKDDWKRALAIMRKDPAALIATTTNIAMARCHDEDALKELIELIYNKYDSEEDIIKRLSVATCTNNFDVVKMFLNNNTLVIKGETLLHLSVQATKCGNKEILEYFWYKAKIHDKEACLVKDNFEVLGLVEYTIKAGLIGHAYHVIKNRVEEKDIPELKSFWEMIFQGLAEKPEVFRSGSKLGPIEGLIYRLIPANIEDTPSYSIGKFTKENVLYNTVGSMQSRRQRWRWNFIKTLGNHAPTRPFN*

Click here to download the sequence:
Link to NCBI Protein BLAST