Transcript Information: R_Transcript_194611.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value1E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.42948143422868
Replicate 20
Replicate 30.53898206108594
Condition 2: 8 Hour
Replicate 10.57613799875871
Replicate 20.78920759439479
Replicate 31.0677418011992
Condition 3: 24 Hour
Replicate 10.2700918497377
Replicate 20
Replicate 30.25750240808114


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_194611.p1 GENE.R_Transcript_194611~~R_Transcript_194611.p1 ORF type:3prime_partial len:85 (+),score=21.90,Plant_NMP1|PF06694.7|4.4e-11 R_Transcript_194611:564-815(+)
ATGAAAGCATGTACAAGTATGTTCTGTTCAAATTATGTGGCAATCACATCTACTGCCCCTCCTGGTTTCTTGTGTGGGGTTGTTTCTGAAAGGCAGTCATTTGCTTACCCTAAACCTCCACCAGAGAATCTGAGAAAATGTTTCTCTATTATTGTTTGTAGGTTGTTGGGCGACAAGCCGCCTTTCTCTCAACAAAATTTGCAAGGAGATGGTGTTGATCGTGATGAAGAGTCTTCTCGGATTCCGTACTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_194611.p1 GENE.R_Transcript_194611~~R_Transcript_194611.p1 ORF type:3prime_partial len:85 (+),score=21.90,Plant_NMP1|PF06694.7|4.4e-11 R_Transcript_194611:564-815(+)
MKACTSMFCSNYVAITSTAPPGFLCGVVSERQSFAYPKPPPENLRKCFSIIVCRLLGDKPPFSQQNLQGDGVDRDEESSRIPYL

Click here to download the sequence:
Link to NCBI Protein BLAST