Transcript Information: R_Transcript_194927.p1


Annotated TAIR IDAT1G56570.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21195804-21197721 | Forward length=611
E-Value3.5E-251
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3947445247792
Replicate 20.38365332986591
Replicate 30.68491906433678
Condition 2: 8 Hour
Replicate 10.52876452543885
Replicate 20.66859779591585
Replicate 31.3266957928522
Condition 3: 24 Hour
Replicate 11.0296690949303
Replicate 21.1357359229367
Replicate 31.1271077164349


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_194927.p1 GENE.R_Transcript_194927~~R_Transcript_194927.p1 ORF type:complete len:602 (+),score=96.50,PPR_2|PF13041.2|0.0041,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|74,PPR_2|PF13041.2|7.3e-06,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|8.6e-09,PPR_2|PF13041.2|0.068,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|0.033,PPR_2|PF13041.2|1.8,PPR_2|PF13041.2|1.3e+04,PPR_2|PF13041.2|9.6e+02,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.00025,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.0036,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.012,PPR|PF01535.16|0.039,PPR|PF01535.16|7.1e+02,PPR|PF01535.16|0.007,PPR|PF01535.16|6.1e-08,PPR|PF01535.16|0.033,PPR|PF01535.16|0.32,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|6.1e+03,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|14,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|36,PPR_1|PF12854.3|1.1e+04,PPR_1|PF12854.3|5.3,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|5,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|9.5,PPR_1|PF12854.3|0.48,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|0.93,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|0.42,PPR_3|PF13812.2|2e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|35,PPR_3|PF13812.2|19,PPR_3|PF13812.2|12,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|1.9e+03,DYW_deaminase|PF14432.2|1.7e+03,DYW_deaminase|PF14432.2|2e-08 R_Transcript_194927:189-1994(+)
ATGAACGCTGTCAAACTATCAACCCCTTTCATTAGCACAATCCCATCAATGATTCTAAATGCACTTCATTGCACCAAACCAAGCCCACCATTTTCACCAAGAAACCCATCATATTTAGCCACTAACCTCATCAAGTCGTACTTTGAAAAGGGGTCTGTCAAGGAAGCACGACAGGTGTTCGACGAAATGCCTGACAGAGATGTTGTTGCTTGGACTGCCATGATTGCTGGTTATGCATCCTGCAACTACGAATCCCTTGCTTGGATGATGTTTCAGGAGATGTTAATGGAAGGGGTCAAGCCAAATGCATTCACTGTTTCAAGTGTGTTGAAGGTTTGTAAAGGAATGAAGTGCTATTATTGTGGAGCTTCAGTTCATGGGCTTGCTATTAAGCTTGGTTTGGTGGGTTCCATTTATGTGGATAATGCTTTGATAGATGTTTATGCTGCATGCTGTAGTAGTATGGACCAAGCATGCATGGTTTTCCGTGATGTTGATCGAAAAAGCGATGTTTCTTGGACTACTTTGATTACAGGATACACTCATCGAGGTGATGGTTACAGTGGACTAGAAGCTTTTCGTCAAATGTTAGCTGAGGAAGCTGAGCCAAGCACCTTCAGTTTCTCAATCGCCATTAAAGCGTGTTCGTTAACTGGACTGAGTGTACATGGTAAGCAATTACACGCTGCTATTATTAAATATGGACTTCAAGCCAGTCCACCTGTTATGAATTCCATTGTAGATATGTATTGTTGGTGTGAGAGTCTATCTGAAGCTAGGCAATGTTTCCATGAGATGCAACTGAAGGACTTGATCACATGGAACACTTTAATTGCTGGCTACAAAAGGTCCAATTCTAGCGAGTGCCTGTCTATGTTCCTGTCAATGGAGTCAGAAGGCTTTACTCCAAATAGCTTCACATTTACAAGTGTTATAGCAGCTTGTGCTGATTTAGCTCTCTTAAATTGTGGACAGCAAATTCATGCAGGAATTCTTAAAAGAGGGCTAGATAGGAACATAGCATCGGCAAACTCCCTCATAGACATGTATGCTAAATGTGGAAGTATTAGGGATTCCAGTAAACTATTTACAGAGATGGCTTTTAGAGACTTAGTTTCATGGACTTCTATGATGATTGGCTTTGGGGCTCATGGTTATGGAAAGGAAGCTGTTGAGTTGTTTGATAAAATGGTCAAATCAGGCATCATACCTGATAGAGTTGTGTTCATGGCTGTTCTAAGTGCTTGCAGCCATGCGGGCCTTGTAAATGAAGGCCTGAGGTATTTTGACTCTATGGTCACAGATTATAAGATCATTCCCGATCAGGATATATACGGATGTGTAGTGGATTTGCTAGGCCGTGCTGGAAAGGTTGAAGCAGCTTATGCTCTGATAAAAAATATGCCAGTGGATCCTGATGACTGTGTTTGGGGGGCACTTTTAGGATCCTGTAAAGCACATATGCTTCCAGATTTGGGCAAGTTGGCAGCCCAATTTGTATCAGATGCAAGGCCAGACATGGTGAGGACATACCTTATGTTATCAAATCTGTATGCATCAGAAGGTGAGTGGGAAAATTTTGCAAGGATGAGGAATTTGATGAAAGGATTAGGGGGGAAGAAAGAACCCGGGTGTAGTTGGATTGAGTTGAAAAACGATGTCTACAGATTCGTTGTCGGAGATAGGGTAGGACCTGAAATGGATAGGGTCTATGAGGTACTGAATATTTTAATTAGACATATGAAAGAAGCAGGTTATGTTCCTGATATGGACTATCTCCTGCATGATCTGGAAGACAGGACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_194927.p1 GENE.R_Transcript_194927~~R_Transcript_194927.p1 ORF type:complete len:602 (+),score=96.50,PPR_2|PF13041.2|0.0041,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|74,PPR_2|PF13041.2|7.3e-06,PPR_2|PF13041.2|0.02,PPR_2|PF13041.2|8.6e-09,PPR_2|PF13041.2|0.068,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|0.033,PPR_2|PF13041.2|1.8,PPR_2|PF13041.2|1.3e+04,PPR_2|PF13041.2|9.6e+02,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.00025,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.0036,PPR|PF01535.16|1e+03,PPR|PF01535.16|0.012,PPR|PF01535.16|0.039,PPR|PF01535.16|7.1e+02,PPR|PF01535.16|0.007,PPR|PF01535.16|6.1e-08,PPR|PF01535.16|0.033,PPR|PF01535.16|0.32,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|6.1e+03,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|14,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|36,PPR_1|PF12854.3|1.1e+04,PPR_1|PF12854.3|5.3,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|5,PPR_1|PF12854.3|0.35,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|9.5,PPR_1|PF12854.3|0.48,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|0.93,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|0.42,PPR_3|PF13812.2|2e+03,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|2.6e+02,PPR_3|PF13812.2|0.57,PPR_3|PF13812.2|35,PPR_3|PF13812.2|19,PPR_3|PF13812.2|12,PPR_3|PF13812.2|2.6e+03,PPR_3|PF13812.2|1.9e+03,DYW_deaminase|PF14432.2|1.7e+03,DYW_deaminase|PF14432.2|2e-08 R_Transcript_194927:189-1994(+)
MNAVKLSTPFISTIPSMILNALHCTKPSPPFSPRNPSYLATNLIKSYFEKGSVKEARQVFDEMPDRDVVAWTAMIAGYASCNYESLAWMMFQEMLMEGVKPNAFTVSSVLKVCKGMKCYYCGASVHGLAIKLGLVGSIYVDNALIDVYAACCSSMDQACMVFRDVDRKSDVSWTTLITGYTHRGDGYSGLEAFRQMLAEEAEPSTFSFSIAIKACSLTGLSVHGKQLHAAIIKYGLQASPPVMNSIVDMYCWCESLSEARQCFHEMQLKDLITWNTLIAGYKRSNSSECLSMFLSMESEGFTPNSFTFTSVIAACADLALLNCGQQIHAGILKRGLDRNIASANSLIDMYAKCGSIRDSSKLFTEMAFRDLVSWTSMMIGFGAHGYGKEAVELFDKMVKSGIIPDRVVFMAVLSACSHAGLVNEGLRYFDSMVTDYKIIPDQDIYGCVVDLLGRAGKVEAAYALIKNMPVDPDDCVWGALLGSCKAHMLPDLGKLAAQFVSDARPDMVRTYLMLSNLYASEGEWENFARMRNLMKGLGGKKEPGCSWIELKNDVYRFVVGDRVGPEMDRVYEVLNILIRHMKEAGYVPDMDYLLHDLEDRT*

Click here to download the sequence:
Link to NCBI Protein BLAST