| Annotated TAIR ID | AT5G52290.1 |
| Annotated Gene Name | shortage in chiasmata 1 |
| Annotated Gene Symbol(s) | SHOC1 |
| Annotation Type | Ortholog |
| Chromosome Position | chr5:21230353-21236554 | Reverse length=1594 |
| E-Value | 3.5E-170 |
| Replicate 1 | 0.60802668070349 |
| Replicate 2 | 0.27976416277546 |
| Replicate 3 | 0.51887346986621 |
| Replicate 1 | 0.40782586521061 |
| Replicate 2 | 0.49161165939982 |
| Replicate 3 | 0.72558070434592 |
| Replicate 1 | 0.67298035844036 |
| Replicate 2 | 0.49958614409036 |
| Replicate 3 | 0.74368616857546 |
>R_Transcript_195293.p1 GENE.R_Transcript_195293~~R_Transcript_195293.p1 ORF type:5prime_partial len:1501 (+),score=298.67 R_Transcript_195293:2-4504(+)
GAAGAATGTGATCATAACATGGAAATACTCAATATAGGTCTTGCAAATCCATACCATGATGATATTAAAGCAACTGTAAAGACGATCAAGCCTCTTTGTCTAGAGTTTGATATGGAACAGCAGGCTGAAATACCAGAAATTCTTCCTGTGCTGAACAATATTAATTCTTGTGAAAACGCATATCCCTTTTTTGAAGTGGATGAGATTGGGGTGGAAGATTGTAGTTGGGATTGCTTGGAAAATGAACTCCATTCCCTCATTGAGAACATTGAAGTGCATTATATGGGCACTGTGGACTTTGAACTTAACTGTCAACATCTACTGGGATCTATGGGAATTAACATCTTGGAGCTTATTGATGGTCAATATAAGTTGGAGCTGCCCCTTCAATTTCATCTGGAAAACACAAATTTGTTTCTAGATATTGATATCTTACAAGTGATGGAGACTTCTTTTACAGAGAGAGACCCTGGGACTGCGGATACTTGTATGATTCCTGTTTCTGAGATATTTCTATTTGAAGATTGTGAAATGCTTGATTCAAACCCCTTTGAGATTTTTGAAGTACAATCCATTTGTCTGACTCCAAAAGAACTAGAGATGTGTGATAAATTATGCCACAGAGATATGAACTTCAAAACTTTTGATGAGCTAATCGTCAGTAGTGAACTAGCAATTATTGATGGTACTTTCATATCACTTCCTGTGCCGGTTATTTTGGATGATGAAAAAATCATGCCATCACATGTTCTTATTGCTGATCTACTCTCTGATCTGGATCCAGTACCACTTTCTACATCTGATAAAATATATCTGGATTGGCACTTACTCGGAAAGGATAAATGCAAAGCCACTGCTGCTATAGAGAAAATGTTCAGTGACACTGAAGATGTTACAATTGATCCTAACCTGAAGCAAAACGATGGCAGCGTACTTTTGCTTGATTTTCTGTTATTAGAAGACCTTTTGAAGGGGTTGAACATTATAGAGAACAGGCTTGACATAGCATCTGGAGGAAGCTGCACACAAAAAGAGAAAAAAGAGGTAGGTGCTTCAAGCATGTTGTCAGATAATGACTGTGAAATAATAGAAAAGGGAGGAAAGCTAACTATTGGTGAATTTGAGAAGAAAGAATCAGGCATGTTGTTTGACGATGACTGTCAAATCATAGGAATGGGTGGAAAGCTAATTGATTTTGGATTTGGGAAGATAGAATCGGGCAAGTTGTTTGATGAGGATTGTCAAATTTTGGAAAATGGGATTCTCAATGATGGTGAATTCAGAAAATCAGTTCCGTGTCTTGAATCTATGTCTGAATTTAATGATCTTGACTTTTTCTTGAACCCTACCAAAGCTACTGATGGTATGAAAATTGATCGTCAGGTCAAGGCACTGAATGCTAAATCTATGTATTCTGGTTGTCTTAACAAGAGTGAAGCAGCCTCTCTGAACAGTAGTCACACGCAGCAGTCAGATATCCGGTTTCATGCTGTTACATTGCCCGAAAATATCATCACCCTTATTGATAATTTCTGCAGAAGTTACTTGACTGTGTATAGGGGTGATGCACAACTGAATGAAGCACAATCAGCCATTGGCAATATGAATGACACACACTTGCTTGGTCTTTCTGAAGAAAAGCTAATGGATCACATCAGCAGATCAACCAAAGAGAAATCTGGTATGGGTTATAACAATGACAACGCCCTCACTTTTGTCACCTTGTGTGCCATCAAACGTATGTCTTGGTGCTTATGTTTCTGCGGTATCTATACTCTACATCTTCTCATGAGCAAATTGTTTCAAAGCCTGGGTTTCCTAAAATCAAGGCTATGCTTTCTTCATTCCTTGGTAGAGGATGCTTGGGCCGTAGTAAATGAGGACATAACCAAGTCCCATCCATCACTAGTTGTCATCAAAGGAATTTTGCAACAGAATGTGAGAAGGAAAAACAAATTATTGATCTTGGCTCTTCAATTTTTATGGGAACCACTGAAAAGGTTGTTAAATTCCATGGATATATCCTTCACAGAAGTTCAAGTTCCTTCTATACATGACAATCAGTCAGACATGTTTTATGACTTACTTGATGCCAGAGCAACATATCAACTGCAGACAGTTTGCTTGTTATTCCCACAGGAGGATGTTTCTCCTCCTATTCTCAAGCAAAATTTTGACATTATCTTAGAGTATGGAGGTCATAGTGGCTTATCAAAAGTGTCAACACTTTATCGTGAATATATTGGATCTCGGACTCTTCATCTTTTGAAGGTGGAGCTAGATGGTGTTGCTAAAGCACTCTGTGAAGGTGTCAATGTTACTTCAAATGACAGAGGTGCAATTAAGTTGGAAGACATGTTAAAATTTGGCCCCTTCACAGAGAAATGCACTTTGTTATCTTCTGAAGCTTCAGGCAGGGCAAATCCTTTGATTATGACTAGTCCAGTTTGTTGCATGGTTCAAGAGTCTAATCCAATTCATTCCAGTGACTTATCCATTCCAGATCTAATCATCGTTTGTAACACTCAAGAATTTGATAAGGAGATGATAATATCCCGGAGAAGCACATATCAAAAGATCCTTAACATCGAGAAGAGGGGAGGGCAAGTCGTAGAACGAGATCTCAATCTTCCTGTAGATATAGTAGTTGACACTACAATGTGTGTAGCATGGTATCACTGCAACAATATTGGACTGCAAGCTACTGATCAAGATGAGGTCTCTTCAAGCATTCCTCTTTGCATTGAGAATATAGCAGCTAATGTCTTGACATCTTTGAGCTTCTCATTCACTACTTGTGTTCTGATTTTTGAAGGAGAAAGCAACTTTCTTGGTAATGTAATGGAGTCAGCAGATGAACTATATGCTGCAGCAGCCAGTCTGGGTATTAATGTCCAGATCTTCTGTTCCTATTCATTTGAGCTGACCGATGAGATTATTTTGGGTACTATTGGAAATGCCATGAAGTTCTCTAAATCCTTACTACCCAGACTTCCTGAGTCAGAGACGCTTGCTGAATCACTCCTTACCAAGTTTCCTTCTATTAATCCGTTAGCAGCACATGCAATTATTTCAAGCCGAAGCATGCTTCTAGAGTTCCTTAGGTGGTCAGTTGAGGACATGATCAATGTACTTGGAAAATATCGTGTCCCTGAGGAAAGTATCAATCTTTTTAGTGTCTTGTGCAAATATGGGGAGCGGGAGGAATCCAAGTCTGGGGTGACGGATTGTTGTTCCTCAGTAGATTCTCCTCCTGAATCTGGAAATTTTGGCCGCAAAGTCAACTCAGAAGATAGAAAACGAAAATTTTTTCCAAGTTCTGATGATGCTATGTGTGACTTCGGATGTTCTAAGCGATCTGGTAAATATATGGATCATGAATTGAATTTCCAAAGTGTCTCAAGGCCATTATATCAAACGGTGTCAAAAAGTCCAAGCCTAAATCGAGAAGAGAAACTGCCTGGCTTGTTGGATGATGAACTGTTTGGTCAAGGAGATGTACCGGATGCTGCTCCAAATACTGGTCCTTCTAAAACCTTGTTTAAACGAAACAGTCCTTGGGCACCTACAATTCTCCAAATGGGGGATGACTTTGCCCAATCTGCCTTGTTTGCAAATGATCAATCTTTCGACCATCAGAAATCTGGTGTGGCCAATAAAAACATCCAAAAAGAGTATGATGGCATACTGGATTTGCGTGAAGCTTTTAGAGGTGAAGTTGTCAACATCCCTGACGAGCCCTTAGGAGTTGGGGACGTACACGCTGCTGGAGAAGCTACAAAGTACTCTCCGTTTGTAGATGAGGTGGTACATGATCATGCTCCGAAAAACAATAGAACTGCCAGAAGATTATCATTTGGTAGCAGCTCCTATCGTAACTTTGCAATGGCTGATGAGATGAATACTAAGTGCGGGCTTGAAGATGGGAGGCAGGAGGACTATAATGTCCTTGGCCACAACTGGAACAAAAGTGAGTTCATGCCCCAGAAGGAGCCAATAGGGGTAAGTTTCATGGAGAATACCCAAAAATTCAATCTCCCATTTTCAAAAGAGAAGGAATTTTCCCCTTATGGTGAAACTCCACTCTCAAGGGCAATTAGTTCAACGCAAGTGCAACAAGGGTCACCCTGGACAATTGAGTTCCTGAACCGGATCAAGGAAAAGAGGAAGTTACGTCAGCAGCATCAGCATTGTTACCCCTTGGCTCCTCAATGTAGCTCTCATGGGAATATCAACAATGTCCCTAAGAGAAAAAGTCCATCCATTCTTGAATATTATAGGTACCAGGGTGGCAGCACTCCCAGGAAGGTGACAGAACAGAAAAGGCACAAGCAACATGCTCAACCAGTGAATGAGAAATCTTCAAGATTTCTCCCAACGTGGACTCCAACTGATAAGAAAGCTAAACGGACTCTATCTTTTGCATCGAGTGGAACTGGACAAAGTAAGCTTATTTGGAGAGACAATAACTCTTCCGGCCACGACAGCAGATTTTCAACTTGA
Click here to download the sequence:
Link to NCBI Nucleotide BLAST
>R_Transcript_195293.p1 GENE.R_Transcript_195293~~R_Transcript_195293.p1 ORF type:5prime_partial len:1501 (+),score=298.67 R_Transcript_195293:2-4504(+)
EECDHNMEILNIGLANPYHDDIKATVKTIKPLCLEFDMEQQAEIPEILPVLNNINSCENAYPFFEVDEIGVEDCSWDCLENELHSLIENIEVHYMGTVDFELNCQHLLGSMGINILELIDGQYKLELPLQFHLENTNLFLDIDILQVMETSFTERDPGTADTCMIPVSEIFLFEDCEMLDSNPFEIFEVQSICLTPKELEMCDKLCHRDMNFKTFDELIVSSELAIIDGTFISLPVPVILDDEKIMPSHVLIADLLSDLDPVPLSTSDKIYLDWHLLGKDKCKATAAIEKMFSDTEDVTIDPNLKQNDGSVLLLDFLLLEDLLKGLNIIENRLDIASGGSCTQKEKKEVGASSMLSDNDCEIIEKGGKLTIGEFEKKESGMLFDDDCQIIGMGGKLIDFGFGKIESGKLFDEDCQILENGILNDGEFRKSVPCLESMSEFNDLDFFLNPTKATDGMKIDRQVKALNAKSMYSGCLNKSEAASLNSSHTQQSDIRFHAVTLPENIITLIDNFCRSYLTVYRGDAQLNEAQSAIGNMNDTHLLGLSEEKLMDHISRSTKEKSGMGYNNDNALTFVTLCAIKRMSWCLCFCGIYTLHLLMSKLFQSLGFLKSRLCFLHSLVEDAWAVVNEDITKSHPSLVVIKGILQQNVRRKNKLLILALQFLWEPLKRLLNSMDISFTEVQVPSIHDNQSDMFYDLLDARATYQLQTVCLLFPQEDVSPPILKQNFDIILEYGGHSGLSKVSTLYREYIGSRTLHLLKVELDGVAKALCEGVNVTSNDRGAIKLEDMLKFGPFTEKCTLLSSEASGRANPLIMTSPVCCMVQESNPIHSSDLSIPDLIIVCNTQEFDKEMIISRRSTYQKILNIEKRGGQVVERDLNLPVDIVVDTTMCVAWYHCNNIGLQATDQDEVSSSIPLCIENIAANVLTSLSFSFTTCVLIFEGESNFLGNVMESADELYAAAASLGINVQIFCSYSFELTDEIILGTIGNAMKFSKSLLPRLPESETLAESLLTKFPSINPLAAHAIISSRSMLLEFLRWSVEDMINVLGKYRVPEESINLFSVLCKYGEREESKSGVTDCCSSVDSPPESGNFGRKVNSEDRKRKFFPSSDDAMCDFGCSKRSGKYMDHELNFQSVSRPLYQTVSKSPSLNREEKLPGLLDDELFGQGDVPDAAPNTGPSKTLFKRNSPWAPTILQMGDDFAQSALFANDQSFDHQKSGVANKNIQKEYDGILDLREAFRGEVVNIPDEPLGVGDVHAAGEATKYSPFVDEVVHDHAPKNNRTARRLSFGSSSYRNFAMADEMNTKCGLEDGRQEDYNVLGHNWNKSEFMPQKEPIGVSFMENTQKFNLPFSKEKEFSPYGETPLSRAISSTQVQQGSPWTIEFLNRIKEKRKLRQQHQHCYPLAPQCSSHGNINNVPKRKSPSILEYYRYQGGSTPRKVTEQKRHKQHAQPVNEKSSRFLPTWTPTDKKAKRTLSFASSGTGQSKLIWRDNNSSGHDSRFST*
Click here to download the sequence:
Link to NCBI Protein BLAST