Transcript Information: R_Transcript_195408.p1


Annotated TAIR IDAT1G11290.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)CRR22
Annotation TypeHomolog
Chromosome Positionchr1:3791454-3793883 | Reverse length=809
E-Value4E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.90023106749463
Replicate 20.28566395124215
Replicate 30.81809777129116
Condition 2: 8 Hour
Replicate 10.62463941191952
Replicate 20.4943732379854
Replicate 31.4817641322765
Condition 3: 24 Hour
Replicate 11.2103605851341
Replicate 20.7126699301377
Replicate 30.93059968906876


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_195408.p1 GENE.R_Transcript_195408~~R_Transcript_195408.p1 ORF type:complete len:588 (+),score=108.65,PPR_2|PF13041.2|0.00073,PPR_2|PF13041.2|7e-05,PPR_2|PF13041.2|31,PPR_2|PF13041.2|2.5e-11,PPR_2|PF13041.2|1.8e+03,PPR_2|PF13041.2|2.1e-09,PPR_2|PF13041.2|8.9,PPR_2|PF13041.2|8e-13,PPR_2|PF13041.2|0.033,PPR_2|PF13041.2|1.3e+03,PPR|PF01535.16|0.00048,PPR|PF01535.16|0.24,PPR|PF01535.16|1.8,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|4.6e+02,PPR|PF01535.16|6.4,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|0.97,PPR|PF01535.16|4.5e-08,PPR|PF01535.16|0.0069,PPR|PF01535.16|89,PPR|PF01535.16|1.7e+03,PPR_1|PF12854.3|0.45,PPR_1|PF12854.3|0.97,PPR_1|PF12854.3|8e+03,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|7.8e+02,PPR_1|PF12854.3|7.1e-06,PPR_1|PF12854.3|2.4e+03,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|1.9e+02,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|8.7e+03,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|3.5e+03,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.00043,PPR_3|PF13812.2|8.4e+02,PPR_3|PF13812.2|9e+02,PPR_3|PF13812.2|6.6e+02 R_Transcript_195408:41-1804(+)
ATGTCCGAACAATTGGGTTCGTTGCTACACTTATGCTCCAAGATCAAGGCTTTACGACCTGGATTTGCCCTTCATGCTGCTGCCCTCAAGGCTGGCTTGTTGTCCAACCTCATTCTTTCCAATCATGTTCTCAATATGTACGCAAAATGTGGTAAAATCTCTCTTGCACACCAACTATTCGACGAAATGCCTGAAAGAAATCTTGTTTCATGGGCATCTCTTATTTCTGGCTATGATCAAGCTGGGGACCCACTTAAGGCAATTAAGCTATACTCTAAGTTGAACTTGAATTTGGTTGTTCCCAATGAATTTGTATTTGCTAGTGTTCTGAGTGCCTGTGCTAGTCTCTCATATTTGACATTTGGTCAACAAGTTCATGCTCAGTCTTTCAAGCTTGGTTGTGATTCTATATCCTTTGTTTCCAATGCTCTAATATCCTTGTACATGAAATGTTGTTTCTGTGAGGATGCTTTAGCAGTGTTTACTAGTTTGGCAAAACCAAATTCTGTTTCTTACAATGCACTGATTGCTGGTTTTGTCGAAAACCGACAGCCAGTCAAGGGGCTTGAGTTGTTCCAGCTAATGCATCAGCATGGTCTTGTTCCAGACCAGTTTAGTTTTTCTGGTGTACTTGACGCATGTTCTAGTACAGAAGATCTCAAGGCGGGTTTACAGTTGCACTGCCAATCGATTAAGTTCAATCTTGATTGCACCCTTTTTGTTGGAAACGTGATCATTGCTATGTACTCAAAGTTTAAATTGATAGATTGTGTGGAAAAGGTATTCGGGCTGATTGAAGAAAAGGATGTCATTTCATGGAACACCCTTATTGCTGCTTATTGTCAGAGTGGCGATTACATGAAGGGTATAGATCTATTTAGAGAGCTGATGAAAGATATATCTGTCAGCCCTGATGATTTCACTTTTGCCAGTGCTCTTGCTGCCTGTGCAGGGACCGCTTCCATATGTCATGGAAAACAAATTCATGCTCGCCTAGTCAGGACAAGGCGAAATTGGGACATAGTGGTGGAGAATGCACTAGTGAGCATGTATGCTAAATGTGGTTGCGTTCTGTACGCTTATACCATGTTTAATCAAATCAGGCATCCCAATCTTGTCTCGTGGAATAGTATGATAGCTGGTTTTGGAAACCACGGGCTTGGGAAGAAAGCCTTAGATCTTTTTGGACATATGCAAGAAAGTGGTTTAAAGCCAGATACTGTCACATTTGTTGCACTTCTGATTGCTTGCAATCATGCTGGTCTTGTGGACGAGGGTGAGTCCTTATTCAAGTCCATGGAAGGTCTTTATGAAATAAGCCCTTCTGCAGAGCATATGTCTTGCTTCATTGATATTCTAGGACGATCTGGAAGATTAGCTCATGCTGAAAGGTATATGAGAAAGTTCCAGTTTGAGAATGATCCTGTGGTTTTGGGAAGTCTATTATCAGCATGCCGATTGCGTGGTGAAGTTGACATGGGACAACGTCTGGGGGAACTTCTACTGAAACTTCAACCTACAAGTACTTCACCTTTTGTCTTGCTCTCAAACTTGTATGCTTCAGATAAGATATGGTCTGGTGTTGCAGAAACAAGGAAGATGCTTAAAGGAAGTGGTTTGATAAAGGAGCCTGGTTACAGTCTTATTGAAATCAAGGGAAAGGTGGAGAAGTTCACAATAGGGGACCTTCCTCGTTCAAGCATCAGTGGCATTAAAGACGTTCTCAGACTTGTACGTCTGGAAGCAAGTGAGCTGCTAACGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_195408.p1 GENE.R_Transcript_195408~~R_Transcript_195408.p1 ORF type:complete len:588 (+),score=108.65,PPR_2|PF13041.2|0.00073,PPR_2|PF13041.2|7e-05,PPR_2|PF13041.2|31,PPR_2|PF13041.2|2.5e-11,PPR_2|PF13041.2|1.8e+03,PPR_2|PF13041.2|2.1e-09,PPR_2|PF13041.2|8.9,PPR_2|PF13041.2|8e-13,PPR_2|PF13041.2|0.033,PPR_2|PF13041.2|1.3e+03,PPR|PF01535.16|0.00048,PPR|PF01535.16|0.24,PPR|PF01535.16|1.8,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|4.6e+02,PPR|PF01535.16|6.4,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|0.97,PPR|PF01535.16|4.5e-08,PPR|PF01535.16|0.0069,PPR|PF01535.16|89,PPR|PF01535.16|1.7e+03,PPR_1|PF12854.3|0.45,PPR_1|PF12854.3|0.97,PPR_1|PF12854.3|8e+03,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|7.8e+02,PPR_1|PF12854.3|7.1e-06,PPR_1|PF12854.3|2.4e+03,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|0.00025,PPR_1|PF12854.3|0.037,PPR_1|PF12854.3|1.9e+02,PPR_3|PF13812.2|0.02,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|8.7e+03,PPR_3|PF13812.2|4.6e+03,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|3.5e+03,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.00043,PPR_3|PF13812.2|8.4e+02,PPR_3|PF13812.2|9e+02,PPR_3|PF13812.2|6.6e+02 R_Transcript_195408:41-1804(+)
MSEQLGSLLHLCSKIKALRPGFALHAAALKAGLLSNLILSNHVLNMYAKCGKISLAHQLFDEMPERNLVSWASLISGYDQAGDPLKAIKLYSKLNLNLVVPNEFVFASVLSACASLSYLTFGQQVHAQSFKLGCDSISFVSNALISLYMKCCFCEDALAVFTSLAKPNSVSYNALIAGFVENRQPVKGLELFQLMHQHGLVPDQFSFSGVLDACSSTEDLKAGLQLHCQSIKFNLDCTLFVGNVIIAMYSKFKLIDCVEKVFGLIEEKDVISWNTLIAAYCQSGDYMKGIDLFRELMKDISVSPDDFTFASALAACAGTASICHGKQIHARLVRTRRNWDIVVENALVSMYAKCGCVLYAYTMFNQIRHPNLVSWNSMIAGFGNHGLGKKALDLFGHMQESGLKPDTVTFVALLIACNHAGLVDEGESLFKSMEGLYEISPSAEHMSCFIDILGRSGRLAHAERYMRKFQFENDPVVLGSLLSACRLRGEVDMGQRLGELLLKLQPTSTSPFVLLSNLYASDKIWSGVAETRKMLKGSGLIKEPGYSLIEIKGKVEKFTIGDLPRSSISGIKDVLRLVRLEASELLT*

Click here to download the sequence:
Link to NCBI Protein BLAST