Transcript Information: R_Transcript_195863.p1


Annotated TAIR IDAT5G08490.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2745208-2747757 | Reverse length=849
E-Value1.7E-277
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.32789750218058
Replicate 20.025145269959638
Replicate 30.24689896810224
Condition 2: 8 Hour
Replicate 10.17594633495026
Replicate 20.29457449132101
Replicate 30.36955374915758
Condition 3: 24 Hour
Replicate 10.57738197818178
Replicate 20.29054832071419
Replicate 30.47183075971755


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_195863.p1 GENE.R_Transcript_195863~~R_Transcript_195863.p1 ORF type:complete len:835 (+),score=137.44,PPR_2|PF13041.2|4.2e+02,PPR_2|PF13041.2|2.1,PPR_2|PF13041.2|0.03,PPR_2|PF13041.2|4.6e+02,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|0.024,PPR_2|PF13041.2|5.4e-07,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|3.1e-05,PPR_2|PF13041.2|21,PPR_2|PF13041.2|1.7e-05,PPR_2|PF13041.2|15,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|12,PPR_2|PF13041.2|6.6,PPR_2|PF13041.2|6.2e+02,PPR|PF01535.16|3.6e+02,PPR|PF01535.16|0.24,PPR|PF01535.16|6.8e+02,PPR|PF01535.16|2.6e+02,PPR|PF01535.16|0.00023,PPR|PF01535.16|0.0032,PPR|PF01535.16|0.001,PPR|PF01535.16|1.1,PPR|PF01535.16|0.038,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|0.47,PPR|PF01535.16|7.2e-06,PPR|PF01535.16|1.1,PPR|PF01535.16|8.9e-06,PPR|PF01535.16|0.65,PPR|PF01535.16|11,PPR|PF01535.16|0.86,PPR_3|PF13812.2|9.2,PPR_3|PF13812.2|63,PPR_3|PF13812.2|5.6e+02,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|66,PPR_3|PF13812.2|90,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|47,PPR_3|PF13812.2|9,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|98,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|71,PPR_3|PF13812.2|71,PPR_3|PF13812.2|22,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|6.3e+02,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|8.4,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|5,PPR_1|PF12854.3|7.8e+02,PPR_1|PF12854.3|1,PPR_1|PF12854.3|29,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.091,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|0.29 R_Transcript_195863:484-2988(+)
ATGCAAGTACCAGACTTCAAAACATGGAGTGAACTTATAAGGGCACAATCTATTGATCACAAATATGATGAGGTTCTTTCACTTTTCCTCTCAAAGGTAAAATGGCCATTTGGGTTTAAACCTGATCACCTTATTCTGCAAGCTGCTCTGAAATCATGTGCTATTATCCCAGCCTTTAGTTTGGGTAGGACACTTCATGGGTTGGTCCTTAAACTGGGTCATCTTTCTTGTCTTTCTGTCTCTAAGGGGTTGCTTAATGTGTATGCTAAAGCTAAAACCTTTAATGACTGCAAGAAACTGTTTGATGAGATGCCAAAACATGATGCTGTTGTTTGGAACATTGTGTTGGCTGGGTTATCTGGGTCCAATATGTATGATGCGCAAGTGATGAGGTTGGTTAGTGACATGCATTCTTGTAATGAACCTAAACCCAGCCCTGTTACTGCTTCTGTTGTTCTTCCTGTTTGTGCTCGTTCGAGGAATTTGTATGCAGGGAAGAGCATGCATTGTTTTGCAATAAAATCGGGTTGGGCTTCAGAGACAAGTGTGGGAAATGCCGTTATATCCATGTATGCGAAATGTGGAGTGGTCCATGATGATGCATATGCATCCTTTTTTGAGATTTATGCCAAAGATGTAGTGTCATGGAATGCAATTATCGCTGGGCTTGCAGAGAACGGGTTCTATATGGATGCTTATGCACTGTTTCGACGTATGTTACTAGGGCCTGTTACACCAAATTATGCTACCATTGCAAGTATTCTACCTGTATTTGCTACTTTAGATAGGGATACTGCTTACTGTTTGGGTAGAGAATTGCATGCTTACACTGTTAAGGAGATTGAGTTGCAAGAAAACATATATGTCATTAATGCGCTCATGAGTTTTTACTCGAGGATGGGTCTGTTAGAAGATGCAGAAGTTCTGTTTAAAGGAATGTCATCAAGGGATGTTGTTTCATGGAATGTCATTATTGGTGGCTGTGTGTCACTCAATGAATATTCTAAAGCAATCCGCTTGTTTTATGAACTGGTTTCTGAGAGGACACTAGAACCAAATTCAGTAACTCTGATTACCGTCCTACCTGCTTGTGCCCATCTGCATAGTTTACAGATGATAAAGCAGATTCATTGGTATATCTTCCAGCATCCAGTTTTATATAATGATACAGCAGTCAGTAATGCCCTGATAAGTTCCTATGTTAAATGTGATGATTTAGATTCTTCATTTAGGACATTCATGAAGATATCTCATAGAGATTTGATCACTTGGAATTCAATTATTGATGCCTTTTCAGGGAGTGGCTGTGAGTCGCAGTTGGTTGATCTCTTACACCAGATGTTTAAAGAGGGGTTTGGACCTGATTCCGTCACTGTTTTAACTCTGATTCGATTTTATGCCAGTGTTTGTAAATTATCCAAGGTTAAAGCAGCTCATGGCTATTTATTACGGGCATGTCTTAGTAAAAGTAGTACTCAACCTCCTCTAAGTGAAGCTTTACTTGATGCATATGCTAGATGTGGCAGAGTTGATTACGCACATAAGATTTTTGGGATTATTTTGGGTGAAATGATCCCATTGGGTGATTCTATAAAACCAGGTTATTTGACTCATAGTTTACAGGGAGCCTATAAAACTTCAGAGGATATGTCTCAAACATATCTCCCAACTTGGAATTTGATGATACGTGCCTATGTGCGAAACAACTGTTATGAAGGGGCTGTGAGTTTGTTGCGTGAATTACAAGTTCTAGGTATGAAGCCGGATGCAGCAACCATTATGAGCATACTTCTCATGTGTGCTAAAATGGCCTCAGTCCAATTGCTAAGGCAATGCCATGGGTATGTGGTTCGGGCTTGTATTGAGGATATTCAATTGAAGGGGACTCTAATAGATGCATATTCAAAATGTGGCAGTGTAAGCATAGCTGATAGGCTTTTTATGTCAAGTACCCAGAAGGACCTAGTTATGCATACATCTCTGATTGGTGGGTATGCGATGAATGGTATGGGGAAGGAAGCAATTGTCGTGTTCAAGAACATGCTTGAGTTGGGCATTAGGCCAGATCATGTTGTTCTGACAACCATTTTATTTGCCTGTGGTCATGCTGGTCTTGTGGACGAGGGTTTGAAAATTTTTTATTCCATAGAAAAGGTCCATAAAATGAAACCTACCATGGAACAATATTGTTGCATTGTGGATCTTCTTTCTCGACAGGGAAAAGTTAAGGATGCATATGCTTTTGTTACTGAGATGCCTGTCAAGGCCAATGGCAACATATGGAGCATATTGTTAGGTGCTTGTAGGAATTATAATGTGGTGGAAATAGGTCAGATTGCTTCTGATCATCTTTTGAGCGTGGAAGCCAGTGATATTGGGAGTTATGTGACCATGTCAAATCTTCATGCGGCAGATGGCAAGTGGGATGGTGTCTTGGAGATCAGAAAACTAATGAAGAGTAGAGACTTAAGGAAGCTAGCTGGTCGCAGTTGGATTGAAGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_195863.p1 GENE.R_Transcript_195863~~R_Transcript_195863.p1 ORF type:complete len:835 (+),score=137.44,PPR_2|PF13041.2|4.2e+02,PPR_2|PF13041.2|2.1,PPR_2|PF13041.2|0.03,PPR_2|PF13041.2|4.6e+02,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|0.024,PPR_2|PF13041.2|5.4e-07,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|3.1e-05,PPR_2|PF13041.2|21,PPR_2|PF13041.2|1.7e-05,PPR_2|PF13041.2|15,PPR_2|PF13041.2|1.4e-05,PPR_2|PF13041.2|12,PPR_2|PF13041.2|6.6,PPR_2|PF13041.2|6.2e+02,PPR|PF01535.16|3.6e+02,PPR|PF01535.16|0.24,PPR|PF01535.16|6.8e+02,PPR|PF01535.16|2.6e+02,PPR|PF01535.16|0.00023,PPR|PF01535.16|0.0032,PPR|PF01535.16|0.001,PPR|PF01535.16|1.1,PPR|PF01535.16|0.038,PPR|PF01535.16|1.1e+04,PPR|PF01535.16|0.47,PPR|PF01535.16|7.2e-06,PPR|PF01535.16|1.1,PPR|PF01535.16|8.9e-06,PPR|PF01535.16|0.65,PPR|PF01535.16|11,PPR|PF01535.16|0.86,PPR_3|PF13812.2|9.2,PPR_3|PF13812.2|63,PPR_3|PF13812.2|5.6e+02,PPR_3|PF13812.2|2.7,PPR_3|PF13812.2|66,PPR_3|PF13812.2|90,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|47,PPR_3|PF13812.2|9,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|98,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|71,PPR_3|PF13812.2|71,PPR_3|PF13812.2|22,PPR_1|PF12854.3|3.5e+02,PPR_1|PF12854.3|6.3e+02,PPR_1|PF12854.3|0.00018,PPR_1|PF12854.3|0.58,PPR_1|PF12854.3|8.4,PPR_1|PF12854.3|2e+03,PPR_1|PF12854.3|5,PPR_1|PF12854.3|7.8e+02,PPR_1|PF12854.3|1,PPR_1|PF12854.3|29,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.091,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|0.29 R_Transcript_195863:484-2988(+)
MQVPDFKTWSELIRAQSIDHKYDEVLSLFLSKVKWPFGFKPDHLILQAALKSCAIIPAFSLGRTLHGLVLKLGHLSCLSVSKGLLNVYAKAKTFNDCKKLFDEMPKHDAVVWNIVLAGLSGSNMYDAQVMRLVSDMHSCNEPKPSPVTASVVLPVCARSRNLYAGKSMHCFAIKSGWASETSVGNAVISMYAKCGVVHDDAYASFFEIYAKDVVSWNAIIAGLAENGFYMDAYALFRRMLLGPVTPNYATIASILPVFATLDRDTAYCLGRELHAYTVKEIELQENIYVINALMSFYSRMGLLEDAEVLFKGMSSRDVVSWNVIIGGCVSLNEYSKAIRLFYELVSERTLEPNSVTLITVLPACAHLHSLQMIKQIHWYIFQHPVLYNDTAVSNALISSYVKCDDLDSSFRTFMKISHRDLITWNSIIDAFSGSGCESQLVDLLHQMFKEGFGPDSVTVLTLIRFYASVCKLSKVKAAHGYLLRACLSKSSTQPPLSEALLDAYARCGRVDYAHKIFGIILGEMIPLGDSIKPGYLTHSLQGAYKTSEDMSQTYLPTWNLMIRAYVRNNCYEGAVSLLRELQVLGMKPDAATIMSILLMCAKMASVQLLRQCHGYVVRACIEDIQLKGTLIDAYSKCGSVSIADRLFMSSTQKDLVMHTSLIGGYAMNGMGKEAIVVFKNMLELGIRPDHVVLTTILFACGHAGLVDEGLKIFYSIEKVHKMKPTMEQYCCIVDLLSRQGKVKDAYAFVTEMPVKANGNIWSILLGACRNYNVVEIGQIASDHLLSVEASDIGSYVTMSNLHAADGKWDGVLEIRKLMKSRDLRKLAGRSWIEA*

Click here to download the sequence:
Link to NCBI Protein BLAST