Transcript Information: R_Transcript_195887.p1


Annotated TAIR IDAT5G08310.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2672756-2675254 | Reverse length=832
E-Value4.1E-216
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.72796151518081
Replicate 20.27912363921223
Replicate 30.71054872897962
Condition 2: 8 Hour
Replicate 10.65102742843488
Replicate 20.2312055729517
Replicate 30.56304848305484
Condition 3: 24 Hour
Replicate 10.77995504614061
Replicate 20.32577930414442
Replicate 30.48495652925179


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_195887.p1 GENE.R_Transcript_195887~~R_Transcript_195887.p1 ORF type:5prime_partial len:677 (+),score=145.25,PPR_2|PF13041.2|0.032,PPR_2|PF13041.2|0.014,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|2.1e-08,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|3e-05,PPR_2|PF13041.2|3.2e-10,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|4.7e-11,PPR_2|PF13041.2|3.5e-14,PPR_2|PF13041.2|4.9e-18,PPR_2|PF13041.2|3.5e-09,PPR_2|PF13041.2|1.1e-07,PPR_1|PF12854.3|4.6e+02,PPR_1|PF12854.3|4.6,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|0.055,PPR_1|PF12854.3|0.00089,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|8e+02,PPR_1|PF12854.3|2.7e+03,PPR_1|PF12854.3|7.5e-07,PPR_1|PF12854.3|2.1e-05,PPR_1|PF12854.3|3e-05,PPR_1|PF12854.3|19,PPR_1|PF12854.3|0.41,PPR_1|PF12854.3|1e-09,PPR_1|PF12854.3|5.2e-12,PPR_1|PF12854.3|6.8e-13,PPR_1|PF12854.3|0.00023,PPR|PF01535.16|4.3e+02,PPR|PF01535.16|2.9e+02,PPR|PF01535.16|0.00025,PPR|PF01535.16|0.0099,PPR|PF01535.16|0.00011,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|37,PPR|PF01535.16|0.00057,PPR|PF01535.16|5.3e-06,PPR|PF01535.16|0.0088,PPR|PF01535.16|0.065,PPR|PF01535.16|0.023,PPR|PF01535.16|0.0064,PPR|PF01535.16|5.5e-07,PPR|PF01535.16|2.9e-07,PPR|PF01535.16|9.8e-05,PPR|PF01535.16|91,PPR_3|PF13812.2|4.5e+03,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|0.034,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|33,PPR_3|PF13812.2|0.049,PPR_3|PF13812.2|3.1e-06,PPR_3|PF13812.2|0.0037,PPR_3|PF13812.2|49,PPR_3|PF13812.2|0.34,PPR_3|PF13812.2|7.9,PPR_3|PF13812.2|2.9e-06,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|0.0034,PPR_3|PF13812.2|1.5e+03,MRP-S27|PF10037.5|2.3e+02,MRP-S27|PF10037.5|1.2,MRP-S27|PF10037.5|1.1e+03,MRP-S27|PF10037.5|1.8,MRP-S27|PF10037.5|1e+02,MRP-S27|PF10037.5|13,MRP-S27|PF10037.5|0.0056,TPR_14|PF13428.2|3.2e+02,TPR_14|PF13428.2|3.9e+02,TPR_14|PF13428.2|2.2e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|29,TPR_14|PF13428.2|1.1e+02,TPR_14|PF13428.2|1e+04,TPR_14|PF13428.2|43,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.3e+03,TPR_14|PF13428.2|3e+03,TPR_19|PF14559.2|1e+03,TPR_19|PF14559.2|3e+02,TPR_19|PF14559.2|1.6e+03,TPR_19|PF14559.2|0.15,TPR_19|PF14559.2|7.6e+02,TPR_19|PF14559.2|6.1e+02,TPR_19|PF14559.2|4.2e+02,TPR_19|PF14559.2|8e+02,TPR_16|PF13432.2|11,TPR_16|PF13432.2|3.1e+03,TPR_16|PF13432.2|0.27,TPR_16|PF13432.2|5.9e+02,TPR_16|PF13432.2|4.4e+03,TPR_16|PF13432.2|3.7e+03,TPR_12|PF13424.2|4.9e+02,TPR_12|PF13424.2|3.2e+03,TPR_12|PF13424.2|1.5e+03,TPR_12|PF13424.2|0.0087,TPR_12|PF13424.2|2.3e+03,TPR_12|PF13424.2|2.7e+03,TPR_12|PF13424.2|1.2e+04 R_Transcript_195887:2-2032(+)
GGAAGTGTGGGGTTGGTGCAAGAAGCTAATGTGCTGTTTGACCAAGTTAGGCAGTTGGGTCTCTGTGTTCCCAACAATTATAGTTATAATTGTTTGTTAGAGACCATTGCTAAATCGAGCTCTGTTGATCTAGCTGAGATGAGATTGAATGAGATCCTTAGTTTTGGGTGGGAGGTTGATAGGTATACTTTGACCCCACTTCTGCAGGTTTACTGCAATGCAGGTAGTTTTGAGAAGGCATTGGGTGTTTTTGATCAAATGTTCGAAATGGGGTGGGTTGATGGACATGTTTTGTCGATCTTAGTTCTTTCTTTTAGCAAGCGGGGAGAAGTGGATAAGGCTTTTGAGTTGATTGAGAGGATGGAAGGTTTTAATGTGAGATTGAATGAGAAGACATTTTATGTACTAATAAATGGGTTTGTTGCTAGTTCTAGGGTGGATAAGGCCCTTCAACTCTTTGAAAAAATGAGTAGATTAGGGTTCTCTGCTGATGTTGCTATCTATGATGTACTAATTGGAGGGCTATGCAAAGTTAAGGATCTCGAGAGAGCATTGTGTTTGTACTCGGAAATGAGAAACCGTGGGATATCTCCTGATGTTAGAATACTCACAAAGCTTATATCATCTGTTAGTGATGAAGAGCTAATGGCAAAGTTGCTTGAGGAAAATGCAGAGGGTCTTGATGATAAATCACTGAAATTGCTTTGCAATTCTGCTTTGACTGCTTTCATCAGCAGTGGTTTAACTGATAGAGCTTATAACCTGGTGAAAAAATTGATGGAAGATGAAACTCAGTATCAGAACAGGATAGCAGAGTTTTTTAAGTCTGAAGGCACGGTTTGTCTAGATTCTACTTCTTTCAATATTATTAATGATGCTTTATGTCATGATGGTAGATTGGATGAAGCACTGCAACTGTTCAGAGACATGGATAAAATCAGGTGTCAGAAGGATGTATTACTTTACAACAATTTGATTGATGCTTTGAGCCGTGCTGGCAGAGTAGCTGACAGTCTTGATCTTTTAAAGGAGATGAAGCAGTCAGGAAGTCAGCCGACTCACTATACATACAACTGCATATATGGGTATTTTTGTAGACAAGGAGATGTCACAGAAGCTATGAGCATAGTGAAAGAGATGCATCGTTACCATCATGAACCATGGATAAAGAATTCTACCACCCTTATTCAACAGCTTTGTAAACATGGGAGAGCTGTGGAAGTTTCTAATTATCTTTTTGAAATGCTTAAAGAAGATCTTTTTCTTCATCTAGTTCCGTACTCTGCAGCTATTGATGGGCTTTTTAAACTTCAAGAAGTGGATCGCGCTTTGGAGTTGTTCAATGATATATGTTCCCGTGGTTACAGACCTGATGTTGTTGCTTGTAACATTTTAATCAATGGGCTCTGTAGAGCTACAAGAATGTCAGAAGCTCAGGAGGTACTTAATGCTGTGCTGGCTGGAGGGCTTGTGCCTTCAACCATAACCTATAACTCTCTTATTGACGGATGGTGCAAGGGCGGTGATGTTGATCAAGCTCTGGTTGTCTTCTCTATGATGTCTAGGGACAATATGAAGCCCAATGTCATCACTTATACAATATTAGTAGATGGGCTATGCAATGCTGGTCGGCCTGATGATGCTGTTATGCTTTGGAATGAAATGGAGGGAAAAGCTTGTTCACCCAACAGAATTGCTTTCATGGCTTTAATCACTGGTCTCTGTAAGAATGATAGGCCAGATATGGCACTACTATATCTCCGTGAAATGGAGAAAAAGGAACTTAGAGCTGACAGTTATGTTTATGTAGCTCTGTTGGATTCTTTTATGTTGAACGACAATCCTGTATCGGCTTTAGTGATATTGAAAGAGATAGCTCACCAGGAAATGTTCCCTGCCCCTTTATATAAAAATCATGCACTTGTAAAAGATGCAATAGCCAAACTATCAGATGATCCCCTCACTTCTTCCAATGTCAATACTCTTCTTGCAGGAGGAGTCATACCTAGTGGGTTTTGGTGTCAAGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_195887.p1 GENE.R_Transcript_195887~~R_Transcript_195887.p1 ORF type:5prime_partial len:677 (+),score=145.25,PPR_2|PF13041.2|0.032,PPR_2|PF13041.2|0.014,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|2.1e-08,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|1.9e+02,PPR_2|PF13041.2|3e-05,PPR_2|PF13041.2|3.2e-10,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|4.7e-11,PPR_2|PF13041.2|3.5e-14,PPR_2|PF13041.2|4.9e-18,PPR_2|PF13041.2|3.5e-09,PPR_2|PF13041.2|1.1e-07,PPR_1|PF12854.3|4.6e+02,PPR_1|PF12854.3|4.6,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|0.055,PPR_1|PF12854.3|0.00089,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|8e+02,PPR_1|PF12854.3|2.7e+03,PPR_1|PF12854.3|7.5e-07,PPR_1|PF12854.3|2.1e-05,PPR_1|PF12854.3|3e-05,PPR_1|PF12854.3|19,PPR_1|PF12854.3|0.41,PPR_1|PF12854.3|1e-09,PPR_1|PF12854.3|5.2e-12,PPR_1|PF12854.3|6.8e-13,PPR_1|PF12854.3|0.00023,PPR|PF01535.16|4.3e+02,PPR|PF01535.16|2.9e+02,PPR|PF01535.16|0.00025,PPR|PF01535.16|0.0099,PPR|PF01535.16|0.00011,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|37,PPR|PF01535.16|0.00057,PPR|PF01535.16|5.3e-06,PPR|PF01535.16|0.0088,PPR|PF01535.16|0.065,PPR|PF01535.16|0.023,PPR|PF01535.16|0.0064,PPR|PF01535.16|5.5e-07,PPR|PF01535.16|2.9e-07,PPR|PF01535.16|9.8e-05,PPR|PF01535.16|91,PPR_3|PF13812.2|4.5e+03,PPR_3|PF13812.2|1.2,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|0.034,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|33,PPR_3|PF13812.2|0.049,PPR_3|PF13812.2|3.1e-06,PPR_3|PF13812.2|0.0037,PPR_3|PF13812.2|49,PPR_3|PF13812.2|0.34,PPR_3|PF13812.2|7.9,PPR_3|PF13812.2|2.9e-06,PPR_3|PF13812.2|0.00046,PPR_3|PF13812.2|0.0034,PPR_3|PF13812.2|1.5e+03,MRP-S27|PF10037.5|2.3e+02,MRP-S27|PF10037.5|1.2,MRP-S27|PF10037.5|1.1e+03,MRP-S27|PF10037.5|1.8,MRP-S27|PF10037.5|1e+02,MRP-S27|PF10037.5|13,MRP-S27|PF10037.5|0.0056,TPR_14|PF13428.2|3.2e+02,TPR_14|PF13428.2|3.9e+02,TPR_14|PF13428.2|2.2e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|29,TPR_14|PF13428.2|1.1e+02,TPR_14|PF13428.2|1e+04,TPR_14|PF13428.2|43,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.3e+03,TPR_14|PF13428.2|3e+03,TPR_19|PF14559.2|1e+03,TPR_19|PF14559.2|3e+02,TPR_19|PF14559.2|1.6e+03,TPR_19|PF14559.2|0.15,TPR_19|PF14559.2|7.6e+02,TPR_19|PF14559.2|6.1e+02,TPR_19|PF14559.2|4.2e+02,TPR_19|PF14559.2|8e+02,TPR_16|PF13432.2|11,TPR_16|PF13432.2|3.1e+03,TPR_16|PF13432.2|0.27,TPR_16|PF13432.2|5.9e+02,TPR_16|PF13432.2|4.4e+03,TPR_16|PF13432.2|3.7e+03,TPR_12|PF13424.2|4.9e+02,TPR_12|PF13424.2|3.2e+03,TPR_12|PF13424.2|1.5e+03,TPR_12|PF13424.2|0.0087,TPR_12|PF13424.2|2.3e+03,TPR_12|PF13424.2|2.7e+03,TPR_12|PF13424.2|1.2e+04 R_Transcript_195887:2-2032(+)
GSVGLVQEANVLFDQVRQLGLCVPNNYSYNCLLETIAKSSSVDLAEMRLNEILSFGWEVDRYTLTPLLQVYCNAGSFEKALGVFDQMFEMGWVDGHVLSILVLSFSKRGEVDKAFELIERMEGFNVRLNEKTFYVLINGFVASSRVDKALQLFEKMSRLGFSADVAIYDVLIGGLCKVKDLERALCLYSEMRNRGISPDVRILTKLISSVSDEELMAKLLEENAEGLDDKSLKLLCNSALTAFISSGLTDRAYNLVKKLMEDETQYQNRIAEFFKSEGTVCLDSTSFNIINDALCHDGRLDEALQLFRDMDKIRCQKDVLLYNNLIDALSRAGRVADSLDLLKEMKQSGSQPTHYTYNCIYGYFCRQGDVTEAMSIVKEMHRYHHEPWIKNSTTLIQQLCKHGRAVEVSNYLFEMLKEDLFLHLVPYSAAIDGLFKLQEVDRALELFNDICSRGYRPDVVACNILINGLCRATRMSEAQEVLNAVLAGGLVPSTITYNSLIDGWCKGGDVDQALVVFSMMSRDNMKPNVITYTILVDGLCNAGRPDDAVMLWNEMEGKACSPNRIAFMALITGLCKNDRPDMALLYLREMEKKELRADSYVYVALLDSFMLNDNPVSALVILKEIAHQEMFPAPLYKNHALVKDAIAKLSDDPLTSSNVNTLLAGGVIPSGFWCQE*

Click here to download the sequence:
Link to NCBI Protein BLAST