Transcript Information: R_Transcript_195984.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3381892132078
Replicate 21.9087545832998
Replicate 33.5969257382388
Condition 2: 8 Hour
Replicate 12.2259877224768
Replicate 23.7884138656554
Replicate 32.0251796973159
Condition 3: 24 Hour
Replicate 11.233270636199
Replicate 21.4581989349142
Replicate 31.4471209710345


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_195984.p1 GENE.R_Transcript_195984~~R_Transcript_195984.p1 ORF type:complete len:242 (+),score=27.79,UBN2_3|PF14244.2|1.8e-15,UBN2|PF14223.2|3.1e-10,Retrotrans_gag|PF03732.13|5.1e+02,Retrotrans_gag|PF03732.13|2e-06,UBN2_2|PF14227.2|1e+04,UBN2_2|PF14227.2|1e-06 R_Transcript_195984:364-1089(+)
ATGGTTGAAAAACCTCACCCTACCTTCTCTGTTTCCAATATTAAAGCCTTCATTCCCCTTCAATTGGATATATCTGACACAAACTATGAAACATGGAAAGAACTCTTCGAGACGCACGCAACCAGTTTCGATGTTCTGGGCCATATTGACGGTACTTCAACTCCGACAGAGGCCACCGCTGCTGCATGGAAACGACTTGATTCCTTAGTCAAGTCATGGATTTACGGTACCATCTCGCTGACTCTCTTCACCATGGTCGTCACTGGCCAAAAACCAACAGCCCATACCATCTGGACAAATGTTCAGAACTTGTTTCGTGACAACAAAGAGTCACGGTCAGTCTGTTTGGAGCACGAATTCCGTACACTTGGGTTGGGTGATCACTCCGTCGCTACGTACTGTCATCGCCTCAAGTCCCTGGCTGATCTTCTAGCAGGGGTTGATTCTCCTGTATCAGACAAAACGTTGGTGATTCAAATGCTCAATGGCCTTCCCCACAAGTATGGTAATGTTATCAATGCTCATCCTCAGCCGGGCCTCCTTGGTCCTGCTCCTCGGCCTTCTCCTCCTATAGCGAATTTTGCATCTGCTCCTACTTTTGCCGCCTCTGTTCCGAACTATCAGCCCACTGCTGACCTACTAGGTGCCTTCAATACCATGACTTTACACAGCCCCAAGAACAAGATGCTTCTTGGTACATGGATTCAGGTGCGACGGCTCATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_195984.p1 GENE.R_Transcript_195984~~R_Transcript_195984.p1 ORF type:complete len:242 (+),score=27.79,UBN2_3|PF14244.2|1.8e-15,UBN2|PF14223.2|3.1e-10,Retrotrans_gag|PF03732.13|5.1e+02,Retrotrans_gag|PF03732.13|2e-06,UBN2_2|PF14227.2|1e+04,UBN2_2|PF14227.2|1e-06 R_Transcript_195984:364-1089(+)
MVEKPHPTFSVSNIKAFIPLQLDISDTNYETWKELFETHATSFDVLGHIDGTSTPTEATAAAWKRLDSLVKSWIYGTISLTLFTMVVTGQKPTAHTIWTNVQNLFRDNKESRSVCLEHEFRTLGLGDHSVATYCHRLKSLADLLAGVDSPVSDKTLVIQMLNGLPHKYGNVINAHPQPGLLGPAPRPSPPIANFASAPTFAASVPNYQPTADLLGAFNTMTLHSPKNKMLLGTWIQVRRLI*

Click here to download the sequence:
Link to NCBI Protein BLAST