Transcript Information: R_Transcript_195988.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0002
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5140704939398
Replicate 21.6448714611846
Replicate 32.3223420604394
Condition 2: 8 Hour
Replicate 10.90270469851595
Replicate 21.6487286150183
Replicate 31.087423677719
Condition 3: 24 Hour
Replicate 11.3753525067288
Replicate 20.71145996421217
Replicate 31.7147049754712


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_195988.p1 GENE.R_Transcript_195988~~R_Transcript_195988.p1 ORF type:internal len:217 (+),score=10.30,gag_pre-integrs|PF13976.2|5.9e+03,gag_pre-integrs|PF13976.2|5.4e+03,gag_pre-integrs|PF13976.2|2.1e-13 R_Transcript_195988:1-648(+)
GCTCATTTAACGAACAATTCAGGTACCTTATCTCATATTTTTAATTCAAGTATGATGTCATTATATCCTTCTCAGGTCAGAGTTGCCAATGGCACCACTATTCCTATCTCTCTCTTAGGTTCTCATGTTTTTCCTAGCAACACTAGGCCACTGTATCTCAACCATGTCCTAGTTACTCCTAGTATTCTCAAAAATTTAATTTCAGTTCGCCAATTCACTACAGATAATAAGTGTTCAATCGAATTTGACCCTTCTGGTTTTTCTGTGAAGGATCTCCAGACACGCCAGACGCTTCTCCGCTGTGATAGTGAGGGTGACCTATACCCTGTTCTACCGCTCGGCTTGCCGCCATCTTCATCTCCTTTGGCCTTTCTCACCACTACTTCCACCCTTTGGCATCAGCGGTTGGGACACCCATGCACTCCTACTTTCAAGTTCTTAGTTTCTAGTGGTTTTATTCAATGTAATAAGGAGATTAGTTCCTCCATTTGTCATGCTTGTCAACTAGGAAAACATGTTAAGCTTCCATTTCAATTGTCTTCAAATTCATTAATTCCCCTTTTGATGTTATTCATTCTGATATATGGACCTCTCCAATTATCAGTGCATCCGGAATTCGATATTATGTTGTGTTTCTTGATCAAAAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_195988.p1 GENE.R_Transcript_195988~~R_Transcript_195988.p1 ORF type:internal len:217 (+),score=10.30,gag_pre-integrs|PF13976.2|5.9e+03,gag_pre-integrs|PF13976.2|5.4e+03,gag_pre-integrs|PF13976.2|2.1e-13 R_Transcript_195988:1-648(+)
AHLTNNSGTLSHIFNSSMMSLYPSQVRVANGTTIPISLLGSHVFPSNTRPLYLNHVLVTPSILKNLISVRQFTTDNKCSIEFDPSGFSVKDLQTRQTLLRCDSEGDLYPVLPLGLPPSSSPLAFLTTTSTLWHQRLGHPCTPTFKFLVSSGFIQCNKEISSSICHACQLGKHVKLPFQLSSNSLIPLLMLFILIYGPLQLSVHPEFDIMLCFLIKK

Click here to download the sequence:
Link to NCBI Protein BLAST