Transcript Information: R_Transcript_196023.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value6E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6659448490418
Replicate 21.9163290062494
Replicate 32.4088434376906
Condition 2: 8 Hour
Replicate 111.708518754536
Replicate 22.6620097429983
Replicate 33.3494043406666
Condition 3: 24 Hour
Replicate 14.4640180720536
Replicate 22.494344755482
Replicate 32.779391071352


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_196023.p1 GENE.R_Transcript_196023~~R_Transcript_196023.p1 ORF type:5prime_partial len:504 (+),score=89.61,SEO_C|PF14577.2|1.5e-87,SEO_N|PF14576.2|3.5e-27 R_Transcript_196023:3-1514(+)
CCTTCTAAGTACATTACTCCTGAGGATCCACCCTTGTCTAATGCTATGAACCACATTGCTAGTGCCTCTTATTGGGCTATTCGTGCTATTGTTGCTTGTGGTGCTCAGATTGTTAACATTGGCATCACTTCTGGGTTGATTGGGTCAGCTACAGAGGCTTGGGACCTTTCGAGCTTGTCACATAAAGTCCAGAGCATACATGAACAACTTGTGCAACGGCTTACTATTTGCTATGAATTCATAGAGGAGAAAAAAAATGAGGAGGCATACAACAATCTAATACTACTGTTCAAGACACCCCAAAAGGACAATGTGAAGATCCTCAAGACACTAATCTATGCAAGCAATGACATGCATCCTCTTGTGGAAGTCTCTACCAAGAAACGGGTCCATATTGATGTTCTTAGAGGCAAGACTGTGCTGCTATTCATCTCGGACCTTGATGTGTCCGAGGAAGAGCTCATGGTCCTCAAGAGGATCTACGAGTCGAGGAAGAACAAGAATGAGCATCAGTATGAGATCGTTTGGATTCCAGTAGTAGACAGGACTATGGTTACATGGACCAAGGAACATGAAAACAAGTTCAGGAACTTGCAGTACAAGATGCCTTGGTACACTTTGTTCCACCATTCATTGCTTAGCCCTGTTTCTATAAGGTATATCAAGGAGGTGTGGGGATTTGTTAAGAAGCAAATCGTTGTGGCATTGGACCAAACGGGCAAAGTCGTAAGCCAAAATGCTCTTCATATGATGCTCATTTGGGGTAACTTGGCTTATCCTTTCACCACTCACAAGGAAGAGGAGCTTTGGAAGAAACAGACTTGGAGCCTTGACTTTGTTCTTGATTCCATTCATCCCGAAATCCCCAAATGGCTTGCACAAGGGGATGTCAACATATGCTTGTTTGGAGGGGAGGACATAGAATGGATCCGCAAATACACAAACTCCATGAAAGATCACGCCAAGACATCAAACATCAAGCTGGAGTTAATCTATGTAGGAAAACACAACGCCAAGGAGGCAGTGAAGAAGATCATGGAAACCATCAACTCTGAAAAACTAGCTCACACCTTACCTGACATGACCAATGTCTGGTACTTCTGGACCCGCCTAGAGTCGATCCTCTACTCCAAGATGCACCATGGCAAGAATGTGAGCAACGACGAGATAGTCAAGGAAGTCATGTCTGTAATGAGCTTTGATGGGGGTGATCAAGGGTGGGGACTCATCGGAAGGGGATCAGCCCAGACAGAGATCATCAAGGGAAAGGGGGATTTGATCCTGCACACTTTTTCCAAGATGAAGGAATGGGAAGTAAACGTAGGAAAACTCGGGTTTTTGGGTGCTTTTCAGGAGCATCTTAAGTCCCTATTCGGGTCATCCAGCACTCATCATTGCAACCGTCTTGTGTTGCCAGCCATCGAAGGTGCAGGTGCCCCCTCTGTTGTTGCTTGTGCTGATTGTGGCCGTCCTATGGACAAGTACATCCTCTACCGCTGTTGCACTGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_196023.p1 GENE.R_Transcript_196023~~R_Transcript_196023.p1 ORF type:5prime_partial len:504 (+),score=89.61,SEO_C|PF14577.2|1.5e-87,SEO_N|PF14576.2|3.5e-27 R_Transcript_196023:3-1514(+)
PSKYITPEDPPLSNAMNHIASASYWAIRAIVACGAQIVNIGITSGLIGSATEAWDLSSLSHKVQSIHEQLVQRLTICYEFIEEKKNEEAYNNLILLFKTPQKDNVKILKTLIYASNDMHPLVEVSTKKRVHIDVLRGKTVLLFISDLDVSEEELMVLKRIYESRKNKNEHQYEIVWIPVVDRTMVTWTKEHENKFRNLQYKMPWYTLFHHSLLSPVSIRYIKEVWGFVKKQIVVALDQTGKVVSQNALHMMLIWGNLAYPFTTHKEEELWKKQTWSLDFVLDSIHPEIPKWLAQGDVNICLFGGEDIEWIRKYTNSMKDHAKTSNIKLELIYVGKHNAKEAVKKIMETINSEKLAHTLPDMTNVWYFWTRLESILYSKMHHGKNVSNDEIVKEVMSVMSFDGGDQGWGLIGRGSAQTEIIKGKGDLILHTFSKMKEWEVNVGKLGFLGAFQEHLKSLFGSSSTHHCNRLVLPAIEGAGAPSVVACADCGRPMDKYILYRCCTG*

Click here to download the sequence:
Link to NCBI Protein BLAST