Transcript Information: R_Transcript_196024.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value8E-93
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2916434195146
Replicate 20.43009181485899
Replicate 30.59719613844718
Condition 2: 8 Hour
Replicate 12.7358508320944
Replicate 20.33312300694504
Replicate 30.9464526952902
Condition 3: 24 Hour
Replicate 12.6933740323005
Replicate 21.3553511050075
Replicate 30.65214762568037


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_196024.p1 GENE.R_Transcript_196024~~R_Transcript_196024.p1 ORF type:5prime_partial len:537 (+),score=87.63,SEO_C|PF14577.2|1.8e-87,SEO_N|PF14576.2|3.9e-27,SEO_N|PF14576.2|1.7e+03 R_Transcript_196024:3-1613(+)
CCTTCTAAGTACATTACTCCTGAGGATCCACCCTTGTCTAATGCTATGAACCACATTGCTAGTGCCTCTTATTGGGCTATTCGTGCTATTGTTGCTTGTGGTGCTCAGATTGTTAACATTGGCATCACTTCTGGGTTGATTGGGTCAGCTACAGAGGCTTGGGACCTTTCGAGCTTGTCACATAAAGTCCAGAGCATACATGAACAACTTGTGCAACGGCTTACTATTTGCTATGAATTCATAGAGGAGAAAAAAAATGAGGAGGCATACAACAATCTAATACTACTGTTCAAGACACCCCAAAAGGACAATGTGAAGATCCTCAAGACACTAATCTATGCAAGCAATGACATGCATCCTCTTGTGGAAGTCTCTACCAAGAAACGGGTGGGTTCTCCTACACGCCATAACATAATTAGTACAGTAATTAGTCACATTGTCCATCATCATCACAACGAAGTTGATTACGACTATGACCTCAAACAGGTCCATATTGATGTTCTTAGAGGCAAGACTGTGCTGCTATTCATCTCGGACCTTGATGTGTCCGAGGAAGAGCTCATGGTCCTCAAGAGGATCTACGAGTCGAGGAAGAACAAGAATGAGCATCAGTATGAGATCGTTTGGATTCCAGTAGTAGACAGGACTATGGTTACATGGACCAAGGAACATGAAAACAAGTTCAGGAACTTGCAGTACAAGATGCCTTGGTACACTTTGTTCCACCATTCATTGCTTAGCCCTGTTTCTATAAGGTATATCAAGGAGGTGTGGGGATTTGTTAAGAAGCAAATCGTTGTGGCATTGGACCAAACGGGCAAAGTCGTAAGCCAAAATGCTCTTCATATGATGCTCATTTGGGGTAACTTGGCTTATCCTTTCACCACTCACAAGGAAGAGGAGCTTTGGAAGAAACAGACTTGGAGCCTTGACTTTGTTCTTGATTCCATTCATCCCGAAATCCCCAAATGGCTTGCACAAGGGGATGTCAACATATGCTTGTTTGGAGGGGAGGACATAGAATGGATCCGCAAATACACAAACTCCATGAAAGATCACGCCAAGACATCAAACATCAAGCTGGAGTTAATCTATGTAGGAAAACACAACGCCAAGGAGGCAGTGAAGAAGATCATGGAAACCATCAACTCTGAAAAACTAGCTCACACCTTACCTGACATGACCAATGTCTGGTACTTCTGGACCCGCCTAGAGTCGATCCTCTACTCCAAGATGCACCATGGCAAGAATGTGAGCAACGACGAGATAGTCAAGGAAGTCATGTCTGTAATGAGCTTTGATGGGGGTGATCAAGGGTGGGGACTCATCGGAAGGGGATCAGCCCAGACAGAGATCATCAAGGGAAAGGGGGATTTGATCCTGCACACTTTTTCCAAGATGAAGGAATGGGAAGTAAACGTAGGAAAACTCGGGTTTTTGGGTGCTTTTCAGGAGCATCTTAAGTCCCTATTCGGGTCATCCAGCACTCATCATTGCAACCGTCTTGTGTTGCCAGCCATCGAAGGTGCAGGTGCCCCCTCTGTTGTTGCTTGTGCTGATTGTGGCCGTCCTATGGACAAGTACATCCTCTACCGCTGTTGCACTGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_196024.p1 GENE.R_Transcript_196024~~R_Transcript_196024.p1 ORF type:5prime_partial len:537 (+),score=87.63,SEO_C|PF14577.2|1.8e-87,SEO_N|PF14576.2|3.9e-27,SEO_N|PF14576.2|1.7e+03 R_Transcript_196024:3-1613(+)
PSKYITPEDPPLSNAMNHIASASYWAIRAIVACGAQIVNIGITSGLIGSATEAWDLSSLSHKVQSIHEQLVQRLTICYEFIEEKKNEEAYNNLILLFKTPQKDNVKILKTLIYASNDMHPLVEVSTKKRVGSPTRHNIISTVISHIVHHHHNEVDYDYDLKQVHIDVLRGKTVLLFISDLDVSEEELMVLKRIYESRKNKNEHQYEIVWIPVVDRTMVTWTKEHENKFRNLQYKMPWYTLFHHSLLSPVSIRYIKEVWGFVKKQIVVALDQTGKVVSQNALHMMLIWGNLAYPFTTHKEEELWKKQTWSLDFVLDSIHPEIPKWLAQGDVNICLFGGEDIEWIRKYTNSMKDHAKTSNIKLELIYVGKHNAKEAVKKIMETINSEKLAHTLPDMTNVWYFWTRLESILYSKMHHGKNVSNDEIVKEVMSVMSFDGGDQGWGLIGRGSAQTEIIKGKGDLILHTFSKMKEWEVNVGKLGFLGAFQEHLKSLFGSSSTHHCNRLVLPAIEGAGAPSVVACADCGRPMDKYILYRCCTG*

Click here to download the sequence:
Link to NCBI Protein BLAST