Transcript Information: R_Transcript_196279.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.56379802176737
Replicate 20.3242671878965
Replicate 31.3266450345262
Condition 2: 8 Hour
Replicate 11.3235602674187
Replicate 20.69068360899415
Replicate 30.77091782557628
Condition 3: 24 Hour
Replicate 10.62048127642443
Replicate 20.51093263839175
Replicate 30.76057661074161


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_196279.p1 GENE.R_Transcript_196279~~R_Transcript_196279.p1 ORF type:3prime_partial len:259 (+),score=54.18,UBN2_3|PF14244.2|1.5e-06 R_Transcript_196279:787-1560(+)
ATGATTCGGGAGGAACTGAATGATAGATATGGTCAGGCCACAGGACCAAAATTATATCAGTTGCAAAAGGATATTTGCTCTATGGCACAAGAGAGTACAAATATTGCTACATACTTTACTAAGTTCAAAGCTCTCTGTGATGAGTTTCACACCCTCAGTCCAGTCACAAATTGCACATGTGGAGCGGCTCAAGCTCTTCTCAAGTTTCAACAAGATCAGAAGGTAGTTCAATTTCTCATGGGACTAAATGGTGATTATAACACTACACGAGGCAACATCTTGATGATGAAGCCCTTACCTAATCTGGCTTCAGCATATGGCCTATTGATTGCTGATGAACAACAAAAGCAGATGCAAGCACCTTCTCATTTTGCTGACAACTCTGCCTCCATGCTTGCTTCTGTTCCTAAAGGCCTTTCTCACAGTAATTTCCGACCTCAATTTTCTCCTAGACCTTCTTTACAACAATCTAATTCAAGGAAGAATATCATTTGCAATCATTACAAGAAATCTGGTCATCCTGCCAGCAAATGCTACAGACTTATTGGATTTCCTAAAGATTTCAAGTTTACTAAACCTAGACCTTTTGCTGCTACTGTCTATGGCGACAATAATGTCTTCACTGGAGATTCTTCTGGTTCTTCTCAACCTGGAAATGCTAGTTCCATTTCTGATCAAGCTCATACTCTTACAACTGATCAATACAATCAGTTTCTGTCTCTCATCAATTCCGTCAATCTCAAGGGTGTTACTACTCCCATGGCTCATTTCTGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_196279.p1 GENE.R_Transcript_196279~~R_Transcript_196279.p1 ORF type:3prime_partial len:259 (+),score=54.18,UBN2_3|PF14244.2|1.5e-06 R_Transcript_196279:787-1560(+)
MIREELNDRYGQATGPKLYQLQKDICSMAQESTNIATYFTKFKALCDEFHTLSPVTNCTCGAAQALLKFQQDQKVVQFLMGLNGDYNTTRGNILMMKPLPNLASAYGLLIADEQQKQMQAPSHFADNSASMLASVPKGLSHSNFRPQFSPRPSLQQSNSRKNIICNHYKKSGHPASKCYRLIGFPKDFKFTKPRPFAATVYGDNNVFTGDSSGSSQPGNASSISDQAHTLTTDQYNQFLSLINSVNLKGVTTPMAHFC

Click here to download the sequence:
Link to NCBI Protein BLAST