Transcript Information: R_Transcript_196283.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.88439649309539
Replicate 20.50865869110816
Replicate 30.46245096089137
Condition 2: 8 Hour
Replicate 10.59319726655506
Replicate 20.15047699758537
Replicate 30.39088259747805
Condition 3: 24 Hour
Replicate 10.61797596844426
Replicate 20.29684063109795
Replicate 30.44187829112175


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_196283.p1 GENE.R_Transcript_196283~~R_Transcript_196283.p1 ORF type:complete len:743 (+),score=132.98,UBN2_3|PF14244.2|9.6e-41,rve|PF00665.22|1.6e+03,rve|PF00665.22|1e-09,Retrotrans_gag|PF03732.13|1.3e-06 R_Transcript_196283:637-2865(+)
ATGGCTGCTGAAGTTGCAACTTCAAGTCCAGTGATTGATGCTTCAAATCCTCTGTACTTACATCCTTCAGATCATCCTGGCTTACTTCTGGTTTCTAAGGTCTTCGATGGCAGTGGTTTTGGTGCCTGGAAAAAGTCTTTCACCATTGCACTTTCGGCCAAGAACAAATTGGGATTTGTCACAGGAAAGGTTCGAAAACCACTTTCTACTTCACCTGAGTTTGAATACTGGCAAAGGTGTAATGATATGGTAACAGCTTGGTTGTTAAATGTCCTGTCTCGAGAAATTGCAGAAAGTGTGATATATTCTGACTCAGCTCAATCAATTTGGGAGGAACTTAATGATAGATATGGTCAGGCCACAGGACCAAAATTGTATCAATTACAAAAAGATGTATGCTCTATGGCACAAGATGGCACAGACATTGCTACTTATTTCACCAGGTTTAAGGCATTGTGTGATGAATTCAATACTCTAAGTCCAGTTACCAATTGTACTTGTGGAGCAGCTCAAGGACTTCTCAAGTTTCAACAAGATCAAAAGGTCGTTCAATTCCTTATGGGACTCAATTGTGATTATAACACCACCAGAGGTAATATCCTCATGATGAAACCCCTGCCTAATTTGGCTTCTGCTTATGGCCTTCTCATTTCTGATGAGCAACAAAAACAAATTCAAGCTCCTTCTCATTTTCTCGATAATTCTGCATCAATGCTGGCTTCTGTTAATACTAATGCTTCTAGAGGTTTTAATAATGGGAACTTCAGACCTCAATTCTCTCCTAGGCCTACTCTATCACAATCAGCTTCCAAGAAAAGTATCATTTGCCATCACTGTAAGAAGCAAGGTCATCCTGCTAGCAAGTGTTACAGATTGATAGGCTTTCCTAAGGATTTTAAATTCACTAAGAACAAGAGCTTTGCAGCCAATGTGTGTGGAGATAATATATCTACTGGAGATATTCCTGGTTCTCCTCTGACTGATAAACTTGGTCATGACCAATCTCACACACTAACAACTGAGCAATACAATCAGTTTCTTTCTCTCATTAATTCAGTCAATCTCAACAATTCTTCTACTGCTATGGCACACTCAGCTGTCACACAATCTGCTGTTGGAGGTTCTCACATGCATGGTGCTTCTGTCAACTTTGCAGGTAAGGTTGCATGCTCCTCTCATAAGTTGTCAGGTTCTTGCATTTGTTGTTTTAGTCAAAACACTGTTGACTGTACTTGGATCTTAGATCCAGGTGCTACTGATCATATGTGTGCACATAAACAATTTTTCTGTGTCTTAACACCATTACCAAAGCCTTTTCATATCACCCTTCCCAATGGTCAGTTTGTTCTGGTTTCTCAAGCTGGAAATATTCAGCTCACACCACACATTCTTCTTACAACTGTACTTTTAGTTCCTAACTTCAAGTACAATCTTCTCTCCATTCAAAAACTCTGCCAACAACTTCATTGTCAAGTATCCTTTACTGAATCTGAATGCATCTTGCAGGGCCTTTCTCAGAAGAGGCCTCAGGTTATTGGTGAAGCTCATGGTGGCCTATACCTTTTCCACATGAAGCCTCAACTTCAGAACCTCAATACTTCTAATAATGTTGTTTCTGTTTCTCCTGCTACTGTGTATAATGCTCCTATTGATATGTCTGTTGCTGATTTACATATGCATGATGTATCTGATTCACATACTGTTTTGAATAAAAATTCTGTTTCTGATACAACTCATGTCTCTTGTACTTCTACTCTCACTGATACAATTATTTGGCATCAGGGATTAGGACATCTTCCCTTATACAAGCTTAAAACTCTTCCTTTTATTCAACATACTGTTTCTGAGATTGTTTGTGATGTCTGCCCGAGAGCAAGACAACAATCTCTTCCTTTTCCTAATAGCCACATCAAAACAGCTGCCCCTTTTGACCTTATTCATGTTGATCTTTGGGGGTCTTATCATACTCACACTTACAATGGACATGCATATTTTTTAACAATTGTGGACGACTTTACAAGGACTACATGGACACATCTTTTGGCTACAAAGAGTAATGCTTGGGGAGTGATAGTAGCTTTTATTCAGATGATTGAAACTCAGTTTTCATCAAAATTGAAGGTGCTTCGATCTGATAATGCATTAGAACTTGGTTCCAGCAATGCAACTATTGAGTATTTCAAAACCAAAGGCATTTTACATCAGACTAGCCTCAGTGGTACTCCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_196283.p1 GENE.R_Transcript_196283~~R_Transcript_196283.p1 ORF type:complete len:743 (+),score=132.98,UBN2_3|PF14244.2|9.6e-41,rve|PF00665.22|1.6e+03,rve|PF00665.22|1e-09,Retrotrans_gag|PF03732.13|1.3e-06 R_Transcript_196283:637-2865(+)
MAAEVATSSPVIDASNPLYLHPSDHPGLLLVSKVFDGSGFGAWKKSFTIALSAKNKLGFVTGKVRKPLSTSPEFEYWQRCNDMVTAWLLNVLSREIAESVIYSDSAQSIWEELNDRYGQATGPKLYQLQKDVCSMAQDGTDIATYFTRFKALCDEFNTLSPVTNCTCGAAQGLLKFQQDQKVVQFLMGLNCDYNTTRGNILMMKPLPNLASAYGLLISDEQQKQIQAPSHFLDNSASMLASVNTNASRGFNNGNFRPQFSPRPTLSQSASKKSIICHHCKKQGHPASKCYRLIGFPKDFKFTKNKSFAANVCGDNISTGDIPGSPLTDKLGHDQSHTLTTEQYNQFLSLINSVNLNNSSTAMAHSAVTQSAVGGSHMHGASVNFAGKVACSSHKLSGSCICCFSQNTVDCTWILDPGATDHMCAHKQFFCVLTPLPKPFHITLPNGQFVLVSQAGNIQLTPHILLTTVLLVPNFKYNLLSIQKLCQQLHCQVSFTESECILQGLSQKRPQVIGEAHGGLYLFHMKPQLQNLNTSNNVVSVSPATVYNAPIDMSVADLHMHDVSDSHTVLNKNSVSDTTHVSCTSTLTDTIIWHQGLGHLPLYKLKTLPFIQHTVSEIVCDVCPRARQQSLPFPNSHIKTAAPFDLIHVDLWGSYHTHTYNGHAYFLTIVDDFTRTTWTHLLATKSNAWGVIVAFIQMIETQFSSKLKVLRSDNALELGSSNATIEYFKTKGILHQTSLSGTP*

Click here to download the sequence:
Link to NCBI Protein BLAST