Transcript Information: R_Transcript_196448.p1


Annotated TAIR IDAT1G08990.1
Annotated Gene Nameplant glycogenin-like starch initiation protein 5
Annotated Gene Symbol(s)PGSIP5
Annotation TypeOrtholog
Chromosome Positionchr1:2888753-2890753 | Forward length=566
E-Value5.2E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.11227968137058
Replicate 30.12249592297408
Condition 2: 8 Hour
Replicate 10
Replicate 20.23915381648327
Replicate 30.097067436472658
Condition 3: 24 Hour
Replicate 10.61384511304022
Replicate 20.23588512182436
Replicate 30.35113964738338


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_196448.p1 GENE.R_Transcript_196448~~R_Transcript_196448.p1 ORF type:5prime_partial len:187 (+),score=18.37 R_Transcript_196448:3-563(+)
ATAAAAGAATCACCTAAACTAGGATTGAATCTCCATTCTTTGCTAATTTTTCAAAATATACTGCTCTTGCTTCAAATTTTCACTAAAAAGCACCAATATATTTATTTGTTTGTTTATTTTATTGGTGGAGAAAATTATCAAATTTTCAACATCAAGTTTGATATATCAAATCATCCGAGAACATTGGATGTAGGTAGCAAGCAGTTGCAAGCCAATCCAAATATGTTGAAACAAAGCAACAACAACAACCACCAAAAGCCAAGAGAAGCCTATGTAACAGTCCTTCACTCTTCTGAACTTTATGTTTGTGGAGCTATAGCTCTAGCACAAAGCATTCGCCTTACAAACATCACTAAGGACTTGGTCCTTTTAGCAGATCACTCCATCTCGAATCATTCGATTGCAGGTCTTCAAGCCGCTGGTTGGAAGATCAAGCGGATTGCTAGAATCCGAAGCCCCAGTGCCCAGAGTGGTGATTATAATGAGTGGAATTACAGCAAGCTGAGGGTGTGGGAATTGACCGAGTCTGTTCATAGACTCCGACTTCATTGTTCTTCGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_196448.p1 GENE.R_Transcript_196448~~R_Transcript_196448.p1 ORF type:5prime_partial len:187 (+),score=18.37 R_Transcript_196448:3-563(+)
IKESPKLGLNLHSLLIFQNILLLLQIFTKKHQYIYLFVYFIGGENYQIFNIKFDISNHPRTLDVGSKQLQANPNMLKQSNNNNHQKPREAYVTVLHSSELYVCGAIALAQSIRLTNITKDLVLLADHSISNHSIAGLQAAGWKIKRIARIRSPSAQSGDYNEWNYSKLRVWELTESVHRLRLHCSS*

Click here to download the sequence:
Link to NCBI Protein BLAST