Transcript Information: R_Transcript_196770.p1


Annotated TAIR IDAT1G52220.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:19453770-19454605 | Reverse length=156
E-Value0.0004
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0951776572831
Replicate 20.62988901248894
Replicate 31.3744042557692
Condition 2: 8 Hour
Replicate 10.97943459788981
Replicate 20
Replicate 30.18151610620387
Condition 3: 24 Hour
Replicate 10.68873421683112
Replicate 20.44110517781155
Replicate 31.7510163749518


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_196770.p1 GENE.R_Transcript_196770~~R_Transcript_196770.p1 ORF type:3prime_partial len:100 (+),score=1.54 R_Transcript_196770:291-587(+)
ATGTTTCAGACTTGGTCTCTAAGAATGTTGACAGATATATCAACTATGTTTGCTTCATTTTTCATGTTTGTAGTTTCAATAAACTTTAAGCTGAATACTGATAATATGCCCTGCTCATTCCTTCTGCTTGTTTACACGTTTTGTTTGTTATTCTTTCCCCTTTTGTTGTCTCCATTTATGCATCCTAACTTGAGATACAACTTCTTTTTCAGTGGTTTGTATACCGATATCTCCTGTTCAAGCCTCAAAGAGAGGAATTGGTTCGGAACATCAACAACTCGATTACGAACATCTCAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_196770.p1 GENE.R_Transcript_196770~~R_Transcript_196770.p1 ORF type:3prime_partial len:100 (+),score=1.54 R_Transcript_196770:291-587(+)
MFQTWSLRMLTDISTMFASFFMFVVSINFKLNTDNMPCSFLLLVYTFCLLFFPLLLSPFMHPNLRYNFFFSGLYTDISCSSLKERNWFGTSTTRLRTSQ

Click here to download the sequence:
Link to NCBI Protein BLAST