Transcript Information: R_Transcript_197315.p1


Annotated TAIR IDAT3G58780.3
Annotated Gene NameK-box region and MADS-box transcription factor family protein
Annotated Gene Symbol(s)SHP1
Annotation TypeOrtholog
Chromosome Positionchr3:21739150-21741766 | Forward length=273
E-Value3.1E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.89475298797641
Replicate 20.13723072167515
Replicate 30.74858619595269
Condition 2: 8 Hour
Replicate 10.56013416545986
Replicate 20.36537388629388
Replicate 30.29659494477756
Condition 3: 24 Hour
Replicate 10.82528065197629
Replicate 20.21622802833899
Replicate 30.71528446689207


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_197315.p1 GENE.R_Transcript_197315~~R_Transcript_197315.p1 ORF type:5prime_partial len:306 (+),score=53.62,SRF-TF|PF00319.14|2.5e-23,K-box|PF01486.13|2.1e-14 R_Transcript_197315:1-918(+)
AAAACAGTACTTTCACAGATTTGGAAAACCTTCATAACCACACTCTTTTCTCCCACTTTTGCCTTCTTTGTCCATTTTAGGCAAAAAACCCCCTCATCTCCCACTCTCTTTAATAAATTCACACTAAGAAAAGGATGCCAGCCATTATTCCTAAGACCACAAACACAAACAACCCTTATAGTTGTTGTACTCCAAAGATCAAAGATCACTTCTTTTTTGTTTTCAAAGATGGGAAGAGGGAAGATTGAGATAAAGAAGATAGAAAACAGGACAAACAGGCAAGTAACCTTCTCAAAGAGAAGAAATGGGATCATGAAGAAAGCCCATGAACTTACTGTCCTTTGTGATGCCACTGTTTCTCTTATTATGGTCTCCAGTACCAAGAAATTGCATGAGTATATCAGCCCTGGTGCCTCGCTTAAGAAGATTTATGATGAGTACCAGAGGATCGCGGATGTTGATATCTGGAGTGCTCACTATGAGAAAATGAAAGAGCATGAAAGGAAATTACTTGAGCAAAATAATATGCTCCGAAGGGAAATTAGCCAAAGGATGGGTGGAGATCTGGAGGATCTGTCCATAGGGGAGCTGAATTGTCTTTCTCAAGAGATGGATAAAGCCTTGGAAACCATCCGTAGTCAAAAGTATCATAAGATCAAAACTCAAACTGGGACAAGCAGAAAGAAGGTTAAGAACCTGGAGGAACAGCATGGAACTCTTCTCATGGATCTTGAGGCAAAATTCGGAGCCCCGCAATTTGGTTTAACAGATGACGACCAGGGGGACTATGATGCTGCGAGTGTGTATGCAAATGATGGAGCAGCAGCCAGTTTGTATGCCCTGAGCCGTCACCCTCGCCACTCTAATCTTCAGCACGGAGGAAGCTATGCAAGTGTCCATGATTTGCGTCTTGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_197315.p1 GENE.R_Transcript_197315~~R_Transcript_197315.p1 ORF type:5prime_partial len:306 (+),score=53.62,SRF-TF|PF00319.14|2.5e-23,K-box|PF01486.13|2.1e-14 R_Transcript_197315:1-918(+)
KTVLSQIWKTFITTLFSPTFAFFVHFRQKTPSSPTLFNKFTLRKGCQPLFLRPQTQTTLIVVVLQRSKITSFLFSKMGRGKIEIKKIENRTNRQVTFSKRRNGIMKKAHELTVLCDATVSLIMVSSTKKLHEYISPGASLKKIYDEYQRIADVDIWSAHYEKMKEHERKLLEQNNMLRREISQRMGGDLEDLSIGELNCLSQEMDKALETIRSQKYHKIKTQTGTSRKKVKNLEEQHGTLLMDLEAKFGAPQFGLTDDDQGDYDAASVYANDGAAASLYALSRHPRHSNLQHGGSYASVHDLRLA*

Click here to download the sequence:
Link to NCBI Protein BLAST