Transcript Information: R_Transcript_197757.p1


Annotated TAIR IDAT3G22150.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:7813028-7815490 | Forward length=820
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.99674872107679
Replicate 20.59716440319391
Replicate 30.46907995077445
Condition 2: 8 Hour
Replicate 10.33427801975761
Replicate 20.45790201722564
Replicate 30.66080948788667
Condition 3: 24 Hour
Replicate 11.018605781434
Replicate 20.401460912684
Replicate 30.82172270155587


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_197757.p1 GENE.R_Transcript_197757~~R_Transcript_197757.p1 ORF type:5prime_partial len:879 (+),score=167.61,PPR_2|PF13041.2|6.3e+02,PPR_2|PF13041.2|1e-06,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|6.8e-07,PPR_2|PF13041.2|1.9e+03,PPR_2|PF13041.2|0.00062,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|1e-05,PPR_2|PF13041.2|35,PPR_2|PF13041.2|3.1e-09,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|9.9e-09,PPR_2|PF13041.2|0.88,PPR_2|PF13041.2|67,PPR_2|PF13041.2|7.4,PPR|PF01535.16|1.6e+02,PPR|PF01535.16|0.024,PPR|PF01535.16|2.4e+02,PPR|PF01535.16|6.8e+02,PPR|PF01535.16|4.5e+02,PPR|PF01535.16|0.00042,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|78,PPR|PF01535.16|0.00092,PPR|PF01535.16|0.0042,PPR|PF01535.16|0.00044,PPR|PF01535.16|2.2,PPR|PF01535.16|7.4e-07,PPR|PF01535.16|4.1e+02,PPR|PF01535.16|1.5e-07,PPR|PF01535.16|0.34,PPR|PF01535.16|14,PPR|PF01535.16|2e+03,PPR|PF01535.16|1.1,PPR_1|PF12854.3|5.1e+02,PPR_1|PF12854.3|50,PPR_1|PF12854.3|3.9e+03,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|33,PPR_1|PF12854.3|26,PPR_1|PF12854.3|8.2,PPR_1|PF12854.3|4.7,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|10,PPR_1|PF12854.3|0.00073,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|0.077,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|8.8e+03,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|0.83,PPR_3|PF13812.2|70,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|4.7,PPR_3|PF13812.2|72,PPR_3|PF13812.2|5.6e+02,PPR_3|PF13812.2|4e+03 R_Transcript_197757:3-2639(+)
GAAACGAACTCAACTGTTTCCTCTACCTGCTTACCAGACAACAATGGAGCCTGTGTTCATAAACTAGAGAAGAACACAAACTACTCAAAAGGGAAAGCAAACCCAAAACCTCATCAATTCTTCTGTACCCACCAAAAATTTTCTATGTCTACTTCTACACTACCACTTCCTTCACCAAACGCACCACCAAACAACCTCTCTTTTAACCGTCAATCCTCTTCACATGTTTCTCTTCCAGACCCACTTCTCTTTTCCCTTGATGAACCCCCAAGGGCCCTTAAAACACCAACAATTAGGACCCGTTTGAGCCAACTTTGTCAAAATGGGCAACCTTTTATTGCCCGCCAGATGTTCGACACATTGCCTAAACCAAGCACTGTTCTTTGGAACACCATAATCATTGGGTTTATCTGTAACAACCTCCCCTTTGAGGCCCTCTTATTCTACTCTAGAATGAGGTCTGTTCCTTCTACTAAATGTGATTCCTATACTTACTCTTCTGTACTTAAGGCTTGTGCCGATACCCGGTTGCTTAAAGTTGGTAAGGCTGTACATTGCCATGTGATAAGATCTCATATTTATGCTAGTAGGATTGTGTATAACTCCTTGTTGAATATGTACTCTACTTGCTTGGCGAGTACGGGTGTATCGCAGTCATGTGAGGTGGATTTGGTCCAAAGGGTTTTTGATACAATGAAGAAGAGGAATGTTGTTGCTTGGAATACTATGATTTCATGGCTTGTGAAAACTGAGAGGTATTATGAGGCTGTTATGCAGTTTAGGCTCATGATGAGAATGGGCATCAAGCTGACGTCTGTGAGTTTTGTTAATGTGTTCCCTGCAGCTTCCAGGATTGGTGATTATGAGCTTGGGAAGGTGTTGTATGGGATGCTTGTTAAGTTTGGTGGTGGATATGTTGATGACTTGTTTGTTGTCAGCTCGACAATAGTTATGTATTCAGAGATGGGTTGTGTGGACCTGGCTCATAAGATCTTTGATGGGTGTTTGGAGAAGAATGTAGAGATTTGGAATAGCTTGATTGGTGGCTATCTTCAGAACAACTGTTATGTTGAAGCGCTTAACCTATTTGTAGAAGCACTCAGTTCAGAACATATGTCACCTGATGATGTTAGTTATATTTCAGCTCTGGCAACCTCCTCTCAGTTGCAGCAAGCATGTATTGGTCAACAACTGCATGCTCATGTGATAAAGAATGCAACCTCTTTTTCTGTCACTGTACTAAATGCTGTTATTGTTATGTATTCAAAGTGTAATTGTATACAGGAAGCCTTTAAGGTTTTTGATGGGATGGTTGAAAGAGATAATGTGTCATGGAATACATTGATTACTGCTATTGTCCAGAATGGATTGGATGAAGAAGGGTTGATGCTTGTTTATGAAATGCAGAATCAGGGGTTTATGGTTGATGCTGTAACAGTCACTGCTCTACTCTCTGCAGCATCAAATCTTAGAAGTGAGAACATCGGGAAGCAGACTCATGCGTATCTTATCAGGCAAGGGATAGAGTTTCAGGGTGTGGACAGTTATCTAATAGACATGTATGCTAAATCTGGTTTGGTCAAGACAGCACAAATATTATTCGAGGAACGCAATGACCTGAGCAGAGACGAAGCAACATGGAATGCCATGATTTCTGGTAACACACAGAATGGATTGACCGAAGAAGCTTTTATTGTATTTCGCCAAATGCTAGAGAGAAATGCATCTCCGAATGCTGTTACCATAGCATCAATTCTCCCTGCTTGTAGTCAAATGGGCAGCATTGGTCTAGGTAAGCAGCTTCATGGCTTTGCTATCCGCCATTTCCTTGACCATAATGTGTTTGTTGGCACTGCTTTAGTAGACATGTATTCAAAGCTGGGTGCCATTGCTTCCGCTAAGAATGTGTTTGCTGACACCCCTGCAAAAACCCCTGTCACGTACACTAGCATGATTTTGGGTTATGGTCAACATGGCATGGGGACTAGAGCTCTTTCCTTATTTTATGAAATGCAGAGTGTAGGCCTTAAACCCGATTCCATCTCCTTCATTGCGGTATTATCTGCCTGTAGCTATGCTGGATTTGTGGATGAAGGTCTTCACATTTTTGAGTTAATGCAGGCAAAATATGGTATCAGACCTTCCCCTGAACATTATGCTTGCATAGTAGACATGTTGGGAAGAGATGGAAGGTTGGGGGAGGCCTTTGAATTGGCCAAAAAATTGGGTGTGGAGGGTAGTGCAATCCAAGCTTGGGGATCACTTCTTGCAGCCTGCAAAACTCATCGACAATATGAATTGGCAAAGATTGTTGCTAATAAGTTGCTTGAGATGGAGTCTAAGAATAGCAGGAGCGGATATTATGTGCTATTGTCGAACATCTATGCAGATGAAGGACATTGGGAAATTGCTGATAGAGTCAGGAAAGAGATGCGAGAGAGAGGTCAGAAAAAGGAGGTTGGCTGCAGTTGGATAGAGATTTCAGGTTGTGTAAATTATTTTGCGTCTAAAGACATGATGCATGAAAGATGTGAGCACATATATGAGATGCTGGCAACATTGGTTGCTGAGATGAAGGATGAGGGCTATAATTCTCTCGGTTATTCAAAGATGGACCAGCTTTCTGATGATGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_197757.p1 GENE.R_Transcript_197757~~R_Transcript_197757.p1 ORF type:5prime_partial len:879 (+),score=167.61,PPR_2|PF13041.2|6.3e+02,PPR_2|PF13041.2|1e-06,PPR_2|PF13041.2|1.2,PPR_2|PF13041.2|6.8e-07,PPR_2|PF13041.2|1.9e+03,PPR_2|PF13041.2|0.00062,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|1e-05,PPR_2|PF13041.2|35,PPR_2|PF13041.2|3.1e-09,PPR_2|PF13041.2|1.6e+02,PPR_2|PF13041.2|9.9e-09,PPR_2|PF13041.2|0.88,PPR_2|PF13041.2|67,PPR_2|PF13041.2|7.4,PPR|PF01535.16|1.6e+02,PPR|PF01535.16|0.024,PPR|PF01535.16|2.4e+02,PPR|PF01535.16|6.8e+02,PPR|PF01535.16|4.5e+02,PPR|PF01535.16|0.00042,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|78,PPR|PF01535.16|0.00092,PPR|PF01535.16|0.0042,PPR|PF01535.16|0.00044,PPR|PF01535.16|2.2,PPR|PF01535.16|7.4e-07,PPR|PF01535.16|4.1e+02,PPR|PF01535.16|1.5e-07,PPR|PF01535.16|0.34,PPR|PF01535.16|14,PPR|PF01535.16|2e+03,PPR|PF01535.16|1.1,PPR_1|PF12854.3|5.1e+02,PPR_1|PF12854.3|50,PPR_1|PF12854.3|3.9e+03,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|33,PPR_1|PF12854.3|26,PPR_1|PF12854.3|8.2,PPR_1|PF12854.3|4.7,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|10,PPR_1|PF12854.3|0.00073,PPR_1|PF12854.3|0.044,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|0.077,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|8.8e+03,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|0.83,PPR_3|PF13812.2|70,PPR_3|PF13812.2|0.16,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|4.7,PPR_3|PF13812.2|72,PPR_3|PF13812.2|5.6e+02,PPR_3|PF13812.2|4e+03 R_Transcript_197757:3-2639(+)
ETNSTVSSTCLPDNNGACVHKLEKNTNYSKGKANPKPHQFFCTHQKFSMSTSTLPLPSPNAPPNNLSFNRQSSSHVSLPDPLLFSLDEPPRALKTPTIRTRLSQLCQNGQPFIARQMFDTLPKPSTVLWNTIIIGFICNNLPFEALLFYSRMRSVPSTKCDSYTYSSVLKACADTRLLKVGKAVHCHVIRSHIYASRIVYNSLLNMYSTCLASTGVSQSCEVDLVQRVFDTMKKRNVVAWNTMISWLVKTERYYEAVMQFRLMMRMGIKLTSVSFVNVFPAASRIGDYELGKVLYGMLVKFGGGYVDDLFVVSSTIVMYSEMGCVDLAHKIFDGCLEKNVEIWNSLIGGYLQNNCYVEALNLFVEALSSEHMSPDDVSYISALATSSQLQQACIGQQLHAHVIKNATSFSVTVLNAVIVMYSKCNCIQEAFKVFDGMVERDNVSWNTLITAIVQNGLDEEGLMLVYEMQNQGFMVDAVTVTALLSAASNLRSENIGKQTHAYLIRQGIEFQGVDSYLIDMYAKSGLVKTAQILFEERNDLSRDEATWNAMISGNTQNGLTEEAFIVFRQMLERNASPNAVTIASILPACSQMGSIGLGKQLHGFAIRHFLDHNVFVGTALVDMYSKLGAIASAKNVFADTPAKTPVTYTSMILGYGQHGMGTRALSLFYEMQSVGLKPDSISFIAVLSACSYAGFVDEGLHIFELMQAKYGIRPSPEHYACIVDMLGRDGRLGEAFELAKKLGVEGSAIQAWGSLLAACKTHRQYELAKIVANKLLEMESKNSRSGYYVLLSNIYADEGHWEIADRVRKEMRERGQKKEVGCSWIEISGCVNYFASKDMMHERCEHIYEMLATLVAEMKDEGYNSLGYSKMDQLSDDE*

Click here to download the sequence:
Link to NCBI Protein BLAST