Transcript Information: R_Transcript_197996.p1


Annotated TAIR IDAT5G66520.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26551879-26553741 | Forward length=620
E-Value4E-86
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.26695372511472
Replicate 20.07676892291151
Replicate 30.16750813598649
Condition 2: 8 Hour
Replicate 10.13429176387886
Replicate 20.49054951022711
Replicate 30.39820717997193
Condition 3: 24 Hour
Replicate 10.37773357413041
Replicate 20.080640800331178
Replicate 30.28009859745572


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_197996.p1 GENE.R_Transcript_197996~~R_Transcript_197996.p1 ORF type:complete len:547 (+),score=79.67,PPR|PF01535.16|3.8e+03,PPR|PF01535.16|0.43,PPR|PF01535.16|0.0044,PPR|PF01535.16|13,PPR|PF01535.16|13,PPR|PF01535.16|15,PPR|PF01535.16|1e-06,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|4.9e-05,PPR|PF01535.16|9e-09,PPR|PF01535.16|0.37,PPR|PF01535.16|0.27,PPR|PF01535.16|83,PPR|PF01535.16|2.7e+03,PPR_2|PF13041.2|21,PPR_2|PF13041.2|2.1e-11,PPR_2|PF13041.2|0.63,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|0.00051,PPR_2|PF13041.2|0.00058,PPR_2|PF13041.2|7e-08,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|40,PPR_2|PF13041.2|1.6e+02,PPR_1|PF12854.3|47,PPR_1|PF12854.3|2e+02,PPR_1|PF12854.3|0.23,PPR_1|PF12854.3|2.8e+03,PPR_1|PF12854.3|76,PPR_1|PF12854.3|14,PPR_1|PF12854.3|0.068,PPR_1|PF12854.3|0.00083,PPR_1|PF12854.3|0.0038,PPR_1|PF12854.3|57,PPR_1|PF12854.3|0.059,PPR_1|PF12854.3|3.6e+02,PPR_3|PF13812.2|9e+03,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|21,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|0.0071,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|14,PPR_3|PF13812.2|5.4e+03,PPR_3|PF13812.2|4.4e+03 R_Transcript_197996:58-1698(+)
ATGTCAGTTACTGAAGCAATTCCCGCCATTACAACCAACTCAAGAGCCCATCTACACATTTTCTCTCTCTTACAATCCTGCAACTCCATAAAGAAACTAACCCAAGTCCATACCCAAATCCTTGTCAATGGCTTTTCAAAAAAGAGAAACATTCTTATCAGCCTAATATCTCTGTACACAATCTATGGCAAGTTCCCACATGCTTGTAAGCTGTTCGATAAAATGCCTAGCCCAACTACGAATGCTTGGAACCAAATGATTAGAGGGTATGGTCATAGTGAAACCCCACACAAATCAATGGCATTGTTCACTAAAATGATGGATGAAGGTTTAGAGCCCAATGAGTACACTTACTCTTATCTCATAAGCGCTTGTGCGCGGTCTTTGATTTTGAGAGACGGGGAACAGGTTCATGGGAGAGTTTTGGCAAGTGGGTATTGCTCGAATGTGTTTATTTCAACAAGTTTGGTGAATTTTTATTACTCCAAGGGTGATAGTGTTGGTCTTGTGAATGCCTACAAGGTGTTTGATGAAATGCTTGAGAGAAATGTGGAGACTTGGAATTCTTTGCTTAAAGGACATATCAGGTGTGGTGGGGATGTTGGTGGGACACTTCGGATATTTGATGAGATACCTGGGAAGAGTGTTGTGTCTTTGACTACAATGCTTACGGGTTATGCTCGAAATGGATGGTTTCGACAGGGGTTGATGTTGTTTCGAGAGATGAGGAGTTCTGGTGTAAAACTGGTTGTGGCAGCTTTGTCAGCATGTGCTGAGTTAGGTGACCTGAGCTTAGGTAAATGGATTCATTCATATGTTTATAAGAGATTTCAGGGGAGGAATCAAGAAATTGATTTGCGTTTACAAAATGCCCTTATTCATATGTATGCTAGCTGTGGATTAATTGAAGAAGCATATAGGGTCTTTAGTGAAATGCCAAGCAGAACCATAGTTTCTTGGACAAGCATGATCATAGGATATGCTAAGCACGGGCTTGCAGAAAAGGCGTTGGATGTTTTTAAAATGATGGAAAACTTGGGTGAAGTGAGACCGGATTCTGTAACTTTCATAGGGGTCGTTTCTGCCTGCAGCCATGCAGGATACGTTGCAGAAGGGCGCTGGTACTTCAAACAAATGACAGAGAAATGGGGTATTGAACCAAGTATTGAACATTTTGGTTGCATTGTTGATCTATTTAGTCGGGCTGGCTTGTTGGATGAAGCACAAGGGGTCATTGAAAGTATGCCGATGAAGCCAAATCATGTTGTGTGGGGTGCACTTCTTAGTGGATGTTTGATTCATAGGAATCCAGAGCTAGCATCCTATGCAGCTCAGAATCTCATGATGGAGCTTGACCAGGACCAAATAATAGATTATCTTGTGCCTGTTGCAAATGCCTATGCAATGGCCAAACGATGGCAAGAGGTAACCATAATACGGCAGAAGATCTTCAAACTCGGTTTACAGAGCTCCTCAGGCCAGAGTTGGCTCCAGATAAATGGATCAATACAAGATTTTGTGTCTGGTGATACTACCCATGAACATGGTTCACCTATTTACGAGATGCTCAATAGACTCGATAAAGAATTGAGGTGTGAACCGAAAACACAGAACATGAGTGAGGAATTTGTTGATTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_197996.p1 GENE.R_Transcript_197996~~R_Transcript_197996.p1 ORF type:complete len:547 (+),score=79.67,PPR|PF01535.16|3.8e+03,PPR|PF01535.16|0.43,PPR|PF01535.16|0.0044,PPR|PF01535.16|13,PPR|PF01535.16|13,PPR|PF01535.16|15,PPR|PF01535.16|1e-06,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|4.9e-05,PPR|PF01535.16|9e-09,PPR|PF01535.16|0.37,PPR|PF01535.16|0.27,PPR|PF01535.16|83,PPR|PF01535.16|2.7e+03,PPR_2|PF13041.2|21,PPR_2|PF13041.2|2.1e-11,PPR_2|PF13041.2|0.63,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|0.00051,PPR_2|PF13041.2|0.00058,PPR_2|PF13041.2|7e-08,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|40,PPR_2|PF13041.2|1.6e+02,PPR_1|PF12854.3|47,PPR_1|PF12854.3|2e+02,PPR_1|PF12854.3|0.23,PPR_1|PF12854.3|2.8e+03,PPR_1|PF12854.3|76,PPR_1|PF12854.3|14,PPR_1|PF12854.3|0.068,PPR_1|PF12854.3|0.00083,PPR_1|PF12854.3|0.0038,PPR_1|PF12854.3|57,PPR_1|PF12854.3|0.059,PPR_1|PF12854.3|3.6e+02,PPR_3|PF13812.2|9e+03,PPR_3|PF13812.2|0.024,PPR_3|PF13812.2|21,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|1.3e+02,PPR_3|PF13812.2|0.032,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|0.0071,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|14,PPR_3|PF13812.2|5.4e+03,PPR_3|PF13812.2|4.4e+03 R_Transcript_197996:58-1698(+)
MSVTEAIPAITTNSRAHLHIFSLLQSCNSIKKLTQVHTQILVNGFSKKRNILISLISLYTIYGKFPHACKLFDKMPSPTTNAWNQMIRGYGHSETPHKSMALFTKMMDEGLEPNEYTYSYLISACARSLILRDGEQVHGRVLASGYCSNVFISTSLVNFYYSKGDSVGLVNAYKVFDEMLERNVETWNSLLKGHIRCGGDVGGTLRIFDEIPGKSVVSLTTMLTGYARNGWFRQGLMLFREMRSSGVKLVVAALSACAELGDLSLGKWIHSYVYKRFQGRNQEIDLRLQNALIHMYASCGLIEEAYRVFSEMPSRTIVSWTSMIIGYAKHGLAEKALDVFKMMENLGEVRPDSVTFIGVVSACSHAGYVAEGRWYFKQMTEKWGIEPSIEHFGCIVDLFSRAGLLDEAQGVIESMPMKPNHVVWGALLSGCLIHRNPELASYAAQNLMMELDQDQIIDYLVPVANAYAMAKRWQEVTIIRQKIFKLGLQSSSGQSWLQINGSIQDFVSGDTTHEHGSPIYEMLNRLDKELRCEPKTQNMSEEFVDW*

Click here to download the sequence:
Link to NCBI Protein BLAST