Transcript Information: R_Transcript_198557.p1


Annotated TAIR IDAT1G09900.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:3218133-3219929 | Forward length=598
E-Value6E-57
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.26122305480814
Replicate 20.26292326102699
Replicate 30.45075870046096
Condition 2: 8 Hour
Replicate 10.13140893531616
Replicate 20.40001577533427
Replicate 30.48707363024294
Condition 3: 24 Hour
Replicate 10.32855538071849
Replicate 20.51291299745529
Replicate 30.93972256258593


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_198557.p1 GENE.R_Transcript_198557~~R_Transcript_198557.p1 ORF type:complete len:559 (+),score=82.49,PPR_2|PF13041.2|2.4e+03,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|1.8e-08,PPR_2|PF13041.2|1.5e-16,PPR_2|PF13041.2|3.2e-13,PPR_2|PF13041.2|2.2e-17,PPR_2|PF13041.2|8.4e-14,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|1.2e-05,PPR_2|PF13041.2|4.7e-09,PPR_2|PF13041.2|0.042,PPR_2|PF13041.2|1.5e+02,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|5.7e+03,PPR_1|PF12854.3|2.3e-13,PPR_1|PF12854.3|1.2e-08,PPR_1|PF12854.3|2.8e-10,PPR_1|PF12854.3|5.7e-13,PPR_1|PF12854.3|2.2e-06,PPR_1|PF12854.3|0.00039,PPR_1|PF12854.3|83,PPR_1|PF12854.3|0.88,PPR_1|PF12854.3|3e-07,PPR_1|PF12854.3|95,PPR|PF01535.16|3.3e+02,PPR|PF01535.16|0.6,PPR|PF01535.16|0.12,PPR|PF01535.16|6.3e-10,PPR|PF01535.16|0.00027,PPR|PF01535.16|1.6e-09,PPR|PF01535.16|2e-06,PPR|PF01535.16|0.0033,PPR|PF01535.16|0.00013,PPR|PF01535.16|1.1,PPR|PF01535.16|2.7,PPR|PF01535.16|0.00058,PPR|PF01535.16|2.3e+02,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|0.00023,PPR_3|PF13812.2|0.75,PPR_3|PF13812.2|2.7e-07,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|3,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|1.2e+04 R_Transcript_198557:95-1771(+)
ATGGCTTCTAGAAATCTCATCAGCCAATCTCTCTCATCAAATCTTTCCACTTCCTCATTAGTGACCTCCATAACTGGAATCCTCCAATCTCTAAAACCCCAACAATTGAAAAGCCAAACCCCTGAAAACTTTCCCCCTCTTTCCCAATTCTCCTCCCACTTAAACCATGATTTGGTCATCCAAGTCATCAAGAACCAAACAAGCCCTTACCATGCTCTCCTTTTCTTCAACTGGGCTTCTAGCCATTCCCCTAACCCCACCAATTATTACCCTTCATTCCCCTGTTACATTGCCATGGTTGATCTTTTTCTTTCTAATGGCTTATTTACATCAGCTACCCAGTTCCTAGAATCCCATAAAATACTCTCTGATTTCATGGTGGGTAAGTTGATCAAAGCCTATGGGAATTGTGGTAACATTAGGGGGGCTATTGATTGGTTTCATAGAGCTAAAATGACCCAAAATGATTGCATCTTTTCTTGCAATGCTTTGTTAGGTGTGTTGGTTAAGGCCAATAGGTTCACTTTGGCTTGTGCAATATTTGATCAGATTGTTAAGGAAGGTGTAACAAAGCCCAATGTTGCTACATACACTACCATGATTAGTGGGTATTGTAAAAAAGGCATGATGGAGAATGCACAGAAGGTGTTTGATGAAATGCCATGCAGGCCGAATAGGTTTACTTACAATATTATGGTTGGTGGGTTTTGTACGAAGGGTATGATGGTGAATGCACGACAGGTTGTGGATCGAATGATTTTGAGTAGGGAATGTTTGCCTGACTTGCTAACTTACACGACGCTGATTGATGGGTATTGCAAGAGTGGTGAGATGGAGGTAGCATTGAGTTGTTTGGGTGAGATGATCGAGCAAGGGTGTGAGCCGAATGTGGTGACTTATAATGCAGTTGTTAATGGGTTTTGCTTGTTTGGTAAGGTTGATGAGGCTAAGAGAATGATGACAAAGATGAGGTTGAATGGTGTGAAAGATGATATTATCACTCACACAAGCTTGCTTAAGGGGTTTTGTGTTATTGGGAGATTAGACGAGGCTTTTAAACATTTAAGGGGGATGATTAGCTTAGTAATAAAACCTGATGTGAAAGCATATGGTGTAGTTTTGAATGAGTGTTGTCGATTAGGGAAGTCGAATGAGGCGATTGCTCTCTTAAGGGAGATGAAATTGAGAGGCGTTGATCCAACTGTTTCTAGTTTCAATGCCGTGTTTAGAGTACTTGTAGAAAAAGACGAACTAGATGTAGCTGTACTTCTTTTGAAAAGGATGCCTGATATGGGTCGTGCTCCGAATTTCTTGTCATATTTTACTGTGATATCAACCCTTTGTAAGTCTGAAGGAAGGGTAGAAGAAGTCGAGCAACTCATACAATGCATGCTCCACAAAGGTCACAAGCCTGACGCTTCGTTGTACAGTTGCTTGATCAAGATGTATTGCAAATCTGGAGATCTTGATATGGCCATTCAAGTCTTGTACGATGCTTTGAGCACAGGGCATGTGATTAGACTTGACAGCTTTGAAGAAATTATAGAGAAATTATGTGCGAAAGGAAGAATTCTGGAGGCTGAACACCATTTCAACAAATTGTCAACAAGTTGTCAAGTTATGCAACTAGATGATTACAAAAGGGTTTTGGACGAGCTAATATGTAAATTTCAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_198557.p1 GENE.R_Transcript_198557~~R_Transcript_198557.p1 ORF type:complete len:559 (+),score=82.49,PPR_2|PF13041.2|2.4e+03,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|1.8e-08,PPR_2|PF13041.2|1.5e-16,PPR_2|PF13041.2|3.2e-13,PPR_2|PF13041.2|2.2e-17,PPR_2|PF13041.2|8.4e-14,PPR_2|PF13041.2|2.2e-08,PPR_2|PF13041.2|1.3e-09,PPR_2|PF13041.2|1.2e-05,PPR_2|PF13041.2|4.7e-09,PPR_2|PF13041.2|0.042,PPR_2|PF13041.2|1.5e+02,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|5.7e+03,PPR_1|PF12854.3|2.3e-13,PPR_1|PF12854.3|1.2e-08,PPR_1|PF12854.3|2.8e-10,PPR_1|PF12854.3|5.7e-13,PPR_1|PF12854.3|2.2e-06,PPR_1|PF12854.3|0.00039,PPR_1|PF12854.3|83,PPR_1|PF12854.3|0.88,PPR_1|PF12854.3|3e-07,PPR_1|PF12854.3|95,PPR|PF01535.16|3.3e+02,PPR|PF01535.16|0.6,PPR|PF01535.16|0.12,PPR|PF01535.16|6.3e-10,PPR|PF01535.16|0.00027,PPR|PF01535.16|1.6e-09,PPR|PF01535.16|2e-06,PPR|PF01535.16|0.0033,PPR|PF01535.16|0.00013,PPR|PF01535.16|1.1,PPR|PF01535.16|2.7,PPR|PF01535.16|0.00058,PPR|PF01535.16|2.3e+02,PPR_3|PF13812.2|1.1e+02,PPR_3|PF13812.2|0.2,PPR_3|PF13812.2|0.00023,PPR_3|PF13812.2|0.75,PPR_3|PF13812.2|2.7e-07,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|3,PPR_3|PF13812.2|0.021,PPR_3|PF13812.2|1.5e+02,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|1.2e+04 R_Transcript_198557:95-1771(+)
MASRNLISQSLSSNLSTSSLVTSITGILQSLKPQQLKSQTPENFPPLSQFSSHLNHDLVIQVIKNQTSPYHALLFFNWASSHSPNPTNYYPSFPCYIAMVDLFLSNGLFTSATQFLESHKILSDFMVGKLIKAYGNCGNIRGAIDWFHRAKMTQNDCIFSCNALLGVLVKANRFTLACAIFDQIVKEGVTKPNVATYTTMISGYCKKGMMENAQKVFDEMPCRPNRFTYNIMVGGFCTKGMMVNARQVVDRMILSRECLPDLLTYTTLIDGYCKSGEMEVALSCLGEMIEQGCEPNVVTYNAVVNGFCLFGKVDEAKRMMTKMRLNGVKDDIITHTSLLKGFCVIGRLDEAFKHLRGMISLVIKPDVKAYGVVLNECCRLGKSNEAIALLREMKLRGVDPTVSSFNAVFRVLVEKDELDVAVLLLKRMPDMGRAPNFLSYFTVISTLCKSEGRVEEVEQLIQCMLHKGHKPDASLYSCLIKMYCKSGDLDMAIQVLYDALSTGHVIRLDSFEEIIEKLCAKGRILEAEHHFNKLSTSCQVMQLDDYKRVLDELICKFQ*

Click here to download the sequence:
Link to NCBI Protein BLAST