Transcript Information: R_Transcript_199399.p1


Annotated TAIR IDAT5G06870.1
Annotated Gene Namepolygalacturonase inhibiting protein 2
Annotated Gene Symbol(s)PGIP2, ATPGIP2
Annotation TypeHomolog
Chromosome Positionchr5:2133941-2135016 | Forward length=330
E-Value3E-40
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.56229500571408
Replicate 21.0945938605653
Replicate 31.0856273742252
Condition 2: 8 Hour
Replicate 11.2765142863493
Replicate 20.42390297329262
Replicate 30.43013295308974
Condition 3: 24 Hour
Replicate 10.87043818872812
Replicate 21.3588548131635
Replicate 30.46679938905705


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_199399.p1 GENE.R_Transcript_199399~~R_Transcript_199399.p1 ORF type:5prime_partial len:422 (+),score=9.74,LRR_8|PF13855.2|1.8e-07,LRR_8|PF13855.2|2.3e-05,LRR_8|PF13855.2|1e+02,LRR_8|PF13855.2|0.1,LRR_8|PF13855.2|3.8e+03,LRR_4|PF12799.3|71,LRR_4|PF12799.3|8,LRR_4|PF12799.3|2.5e-07,LRR_4|PF12799.3|7.5,LRR_4|PF12799.3|0.15,LRR_4|PF12799.3|13,LRR_4|PF12799.3|0.44,LRRNT_2|PF08263.8|2e-06,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|1.6e+02,LRR_1|PF00560.29|0.022,LRR_1|PF00560.29|32,LRR_1|PF00560.29|6.4e+02,LRR_1|PF00560.29|0.4,LRR_1|PF00560.29|1.7e+03,LRR_1|PF00560.29|7.5e+03,LRR_1|PF00560.29|1.1e+03,LRR_1|PF00560.29|49,LRR_1|PF00560.29|1.1e+03 R_Transcript_199399:1-1266(+)
AAAGCCACAACAATGACTACCAAAAACCATGCAAGAATCTCACACCACCAGTTGCCATTACTCTCCTTTTCCCTCCTTGTCATCTTCTTTAGCCAAATTGTTTGCTCAGAGATCTGCAATCCTTACGATAAAGAGAGGCTCCTTGAAATCAAAACCAAGTTAGGCAACCCAGCCTCATTGGAATCATGGAACCCAAACACAGATTGTTGTAACCAGTGGTACTCCAACACATTGTTCGACATCGTTTGTGATGCTCAAGGCCATGTCACTAGCCTTTGGCTGTCTATGGCTGACGATCTCTCCATTGACCTATTCCCGGCCTTGGGTGATCTACCTTTCCTTGAGAATCTTATCCTCGATAGCATCACAAGTTTCTCGAACCCCATCCCCACGGCCGTGTGCACAACTTTTAAAAGACTTAAGTATCTAACCGTTAGGGCTTGCGACCTTAATGGTCCAATTCCGGATTGCTTAAACCAACTCCAAAATCTAAGGTCTCTTGACTTGTCTAACAATCGATTCACTGGCCAAATCCCATCCACCCTTGGAGAACTCCCAAACCTCTTGGAACTTAACCTCTATGGCAATCAACTGTCTGGTGCCATACCTGAGTTCACGAGCTCCAGGAACCGTATGTATTGGCTAGGTCTTGGCTCCAACCGATTTTCGGGCCCCATCCCTACTCATCTTGGACTTATGTCTAACCTTAGCTACCTATCACTTTACAATAACATGTTCAACGGTTCACTTCCCGTCAATCTTGGATACGTGGAAAGCCTCCGTTATTTAGATCTTTCTTCGAACGACTTTCATGGAGAGATCCCTGGGAGTTATGGGAAATTAACGGATTCCATAGTCCTCAAGTTGAACGACAATCACTTGACTGGACAACTTCCTGATACCATGAGACAATTCAATCCAATGGAGCTGAATCTTGCCCGGAACTATAGACTCGACGGAGATGCCATGTTTTTGTTCGCAAGCGATAGATCCTGGGTGAACAGTGTGGATCTTAGCCACAATCGTTTCTCGTTTAATATCACCAATCTGGTGCCCCCGCCGGATTTACGGACTCTCAATATAAGCCACAACCTGATATATGGGTCATTTCCGGTGAAACTAGGGAGTCAGCTTCCGTATTTCAATATTGATGTGAGTTACAATAAGCTCCGCGGACAGATCCCTCAAGGGTGGGAAAATTTCAACCCTGTCTACTTCTATCATAACAAGTGCCTTTGTGGTCGTCCATTAGAAGCCTGTAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_199399.p1 GENE.R_Transcript_199399~~R_Transcript_199399.p1 ORF type:5prime_partial len:422 (+),score=9.74,LRR_8|PF13855.2|1.8e-07,LRR_8|PF13855.2|2.3e-05,LRR_8|PF13855.2|1e+02,LRR_8|PF13855.2|0.1,LRR_8|PF13855.2|3.8e+03,LRR_4|PF12799.3|71,LRR_4|PF12799.3|8,LRR_4|PF12799.3|2.5e-07,LRR_4|PF12799.3|7.5,LRR_4|PF12799.3|0.15,LRR_4|PF12799.3|13,LRR_4|PF12799.3|0.44,LRRNT_2|PF08263.8|2e-06,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|1.6e+02,LRR_1|PF00560.29|0.022,LRR_1|PF00560.29|32,LRR_1|PF00560.29|6.4e+02,LRR_1|PF00560.29|0.4,LRR_1|PF00560.29|1.7e+03,LRR_1|PF00560.29|7.5e+03,LRR_1|PF00560.29|1.1e+03,LRR_1|PF00560.29|49,LRR_1|PF00560.29|1.1e+03 R_Transcript_199399:1-1266(+)
KATTMTTKNHARISHHQLPLLSFSLLVIFFSQIVCSEICNPYDKERLLEIKTKLGNPASLESWNPNTDCCNQWYSNTLFDIVCDAQGHVTSLWLSMADDLSIDLFPALGDLPFLENLILDSITSFSNPIPTAVCTTFKRLKYLTVRACDLNGPIPDCLNQLQNLRSLDLSNNRFTGQIPSTLGELPNLLELNLYGNQLSGAIPEFTSSRNRMYWLGLGSNRFSGPIPTHLGLMSNLSYLSLYNNMFNGSLPVNLGYVESLRYLDLSSNDFHGEIPGSYGKLTDSIVLKLNDNHLTGQLPDTMRQFNPMELNLARNYRLDGDAMFLFASDRSWVNSVDLSHNRFSFNITNLVPPPDLRTLNISHNLIYGSFPVKLGSQLPYFNIDVSYNKLRGQIPQGWENFNPVYFYHNKCLCGRPLEACK*

Click here to download the sequence:
Link to NCBI Protein BLAST