Transcript Information: R_Transcript_199402.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value4E-53
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4341612178708
Replicate 22.5995419563036
Replicate 31.9088947996794
Condition 2: 8 Hour
Replicate 10.93279485513315
Replicate 20.63888233831959
Replicate 30.5618355668215
Condition 3: 24 Hour
Replicate 11.3118746987259
Replicate 22.3105509313938
Replicate 30.26056791293925


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_199402.p1 GENE.R_Transcript_199402~~R_Transcript_199402.p1 ORF type:complete len:420 (+),score=11.90,LRR_8|PF13855.2|1.5e+02,LRR_8|PF13855.2|1e-05,LRR_8|PF13855.2|2.6e-07,LRR_8|PF13855.2|0.00019,LRR_8|PF13855.2|0.026,LRR_8|PF13855.2|4.7e+03,LRR_4|PF12799.3|4.5,LRR_4|PF12799.3|3.5,LRR_4|PF12799.3|0.0097,LRR_4|PF12799.3|1.1,LRR_4|PF12799.3|6.9,LRR_4|PF12799.3|5.2e+02,LRR_4|PF12799.3|2.4,LRR_4|PF12799.3|9.6e+03,LRR_1|PF00560.29|0.066,LRR_1|PF00560.29|2.1e+03,LRR_1|PF00560.29|4.6e+03,LRR_1|PF00560.29|24,LRR_1|PF00560.29|0.038,LRR_1|PF00560.29|2.3e+02,LRR_1|PF00560.29|2.8e+03,LRR_1|PF00560.29|1.8e+03,LRR_1|PF00560.29|20,LRRNT_2|PF08263.8|3.9e-06,LRRNT_2|PF08263.8|1.1e+04,LRRNT_2|PF08263.8|1.6e+04 R_Transcript_199402:67-1326(+)
ATGGGTTGGCCAAACCATGCAAGGATCTTTCACCTCCAATTACAATTACTCTCCCTTTTTGTTATTCTTTTACTCTTCAACCAAACTGTTTCCTCGGAGCTTTGCAATCCGCACGACAAAACCATCCTCCTTCAAATCAAAACCCGGTTAGGAAACCCATCCTCATTGGGATCATGGGATCCGAACACAGATTGTTGCAACGATTGGTATTCCTACACAACAGCCGACATTACATGCGACGATCAAGGTCATGTGATTGGCCTTTGGTTGTCTTCAACTGATGATATCTCCATTGATCTATTGCCGGCCTTGGGTGATCTACCTTACCTTGAGTATCTTAAGTTAGACTTCATATCAAGTCTCTCTAACCCAATCCCCACATCCGTGTGCTCCAAGTTTAAAAAACTTTGGTTTCTTACCATTATGAGTTGTGACATTTATGGTCCAATTCCAGATTGCTTAAGCCAAATCCCAAATCTAAAGCATCTAGACTTGTCCTATAATAAACTTTCGGGTCAAATCCCAACCACCCTTGGCCGGATCCGGAACCTCTTGTCCCTTGGCCTCAATGATAATAAACTATCTGGGTCCATACCCGAGTTCTTGAACTCAAGGACCAGCATGTACTCGCTAAGTGTAGTCTCTAACCAATTGTCCGGCTCCATCCCAGAGCATCTTGGGCTCATGTCTAACCTTAGCGAACTTTTCCTTTCCCATAACCAGTTCAATGGTTCCATCCCGGCCTCTCTTGGATATGTAGGAAGCCTACGTTGGTTGGATCTTTCTTCGAACCAACTAACTGGACCGATCCCTGAGAGTTTCGGGTCATTACCGGATTCCATAATCCTTAGGTTGAATGACAATCAATTGACCGGCCCACTTCCGAGATCTATGAGCCGGTTTAATCCGATGGAGCTGAATCTTGCTAGGAATTATAACCTCACTGGAGATGCCTCGTTTTTGTTTGCAAGCAACAAGTCTTGGATAAACAGTGTCGATCTTAGCCACAATCGTTTCAAGTTTAATATCACAGATTTGGACCCCCCTCGAGAGTTAAGGAGACTCAATATAAGCCACAACAAAATATATGGGTCATTCCCTGTGAAATTAGGGTTTCAGCTTCCAGATTTCAGTATTGATGTGAGTTACAATAAGCTATCCGGGCAGATCCCTAGTGGTCAAGGGTGGGAAAATTTTGACCCAGTCTACTTCTCTCATAATAAGTGCCTTTGTGGTCTTCCGCTAGCTGCTTGTAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_199402.p1 GENE.R_Transcript_199402~~R_Transcript_199402.p1 ORF type:complete len:420 (+),score=11.90,LRR_8|PF13855.2|1.5e+02,LRR_8|PF13855.2|1e-05,LRR_8|PF13855.2|2.6e-07,LRR_8|PF13855.2|0.00019,LRR_8|PF13855.2|0.026,LRR_8|PF13855.2|4.7e+03,LRR_4|PF12799.3|4.5,LRR_4|PF12799.3|3.5,LRR_4|PF12799.3|0.0097,LRR_4|PF12799.3|1.1,LRR_4|PF12799.3|6.9,LRR_4|PF12799.3|5.2e+02,LRR_4|PF12799.3|2.4,LRR_4|PF12799.3|9.6e+03,LRR_1|PF00560.29|0.066,LRR_1|PF00560.29|2.1e+03,LRR_1|PF00560.29|4.6e+03,LRR_1|PF00560.29|24,LRR_1|PF00560.29|0.038,LRR_1|PF00560.29|2.3e+02,LRR_1|PF00560.29|2.8e+03,LRR_1|PF00560.29|1.8e+03,LRR_1|PF00560.29|20,LRRNT_2|PF08263.8|3.9e-06,LRRNT_2|PF08263.8|1.1e+04,LRRNT_2|PF08263.8|1.6e+04 R_Transcript_199402:67-1326(+)
MGWPNHARIFHLQLQLLSLFVILLLFNQTVSSELCNPHDKTILLQIKTRLGNPSSLGSWDPNTDCCNDWYSYTTADITCDDQGHVIGLWLSSTDDISIDLLPALGDLPYLEYLKLDFISSLSNPIPTSVCSKFKKLWFLTIMSCDIYGPIPDCLSQIPNLKHLDLSYNKLSGQIPTTLGRIRNLLSLGLNDNKLSGSIPEFLNSRTSMYSLSVVSNQLSGSIPEHLGLMSNLSELFLSHNQFNGSIPASLGYVGSLRWLDLSSNQLTGPIPESFGSLPDSIILRLNDNQLTGPLPRSMSRFNPMELNLARNYNLTGDASFLFASNKSWINSVDLSHNRFKFNITDLDPPRELRRLNISHNKIYGSFPVKLGFQLPDFSIDVSYNKLSGQIPSGQGWENFDPVYFSHNKCLCGLPLAACK*

Click here to download the sequence:
Link to NCBI Protein BLAST