Transcript Information: R_Transcript_199403.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value4E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.532023101715
Replicate 22.6685945373233
Replicate 31.867695631341
Condition 2: 8 Hour
Replicate 10.88078650889371
Replicate 20.42898574275656
Replicate 30.73999371833712
Condition 3: 24 Hour
Replicate 11.8168048885234
Replicate 22.803186381776
Replicate 30.89230450761932


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_199403.p1 GENE.R_Transcript_199403~~R_Transcript_199403.p1 ORF type:complete len:417 (+),score=14.60,LRR_8|PF13855.2|9.5e+03,LRR_8|PF13855.2|2.4e+02,LRR_8|PF13855.2|2.6e-08,LRR_8|PF13855.2|4.9e-07,LRR_8|PF13855.2|0.0026,LRR_8|PF13855.2|0.58,LRR_8|PF13855.2|2.8e+03,LRR_4|PF12799.3|4.2,LRR_4|PF12799.3|13,LRR_4|PF12799.3|2.2e-06,LRR_4|PF12799.3|2,LRR_4|PF12799.3|3.2,LRR_4|PF12799.3|1.8e+03,LRR_4|PF12799.3|2.1,LRR_1|PF00560.29|1.1e+04,LRR_1|PF00560.29|0.07,LRR_1|PF00560.29|14,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|24,LRR_1|PF00560.29|0.038,LRR_1|PF00560.29|3.7e+02,LRR_1|PF00560.29|5.1e+03,LRR_1|PF00560.29|3.6e+03,LRR_1|PF00560.29|16,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|6.9e-07,LRRNT_2|PF08263.8|1.1e+04 R_Transcript_199403:63-1313(+)
ATGGTTTGCCCAAACCATGCAAGGATTTTTCACCTCCAATTACTATTACTCTCCCTTTTTCTCATTCTTTTCCTCTCCAACAAAACTGTTTGCTCGGAGCTTTGCAATCCGTACGACAAAAACATCCTCCTTCAAATCAAAAACCGGTTAGGCAACCCGTCATCATTAGGATCATGGGATCCGAACACAGATTGTTGCAACGATTGGTATTCCTACACAACAGCCGACATTACATGCGACGATCAAGGTCATGTGATTGGCCTTTGGTTGTCTTCAACTGATGATATCTCCATTGATCTATTGCCGGCCTTGGGTGATCTACCTTACCTTGAGTATCTTAAGTTAGACTTCATATCAAGTCTCTCTAACCCAATCCCCACATCTGTGTGCACCAAGTTTAGAAAACTTTGGTCTCTTACCATTATGAGTTGTGACATTTATGGTCCAATTCCAGATTGCTTAAGCCAATTCCCAAACCTAAAGCATCTAGACTTGTCCTATAATCGACTTTCCGTCCAAATCCCAACCACCCTTGGCCGAATCCCGAACCTCTTGTCCCTTAACCTCAATGGTAACAAACTATCTGGGTCCATACCCGAGTTCTCGAGCTCAAGGACCAGCATGTACTGGCTAAGTGTTGTCTTTAACCAATTGTCCGGCTCCATCCCAGAGCATCTTGGGCTCATGTCTAACCTTAGCGAACTTTTCCTTTCCCATAACCAGTTCAATGGTTCCATCCCGGCCTCTCTTGGATATGTAGGAAGCCTACGTTGGTTGGATCTTTCTTCGAACCAACTCACTGGACCGATTCCTGAGAGTTTCGGGTCATTAACAGATTCCATAATCCTCAGGTTGAACGATAATCGATTAACAGGACAGCTTCCGAAATCCATGAGCCGGTTTAATCCGATGGAGCTGAATCTTGCTAGGAATTATAACCTCACTGGAGATGCCTTGTTTTTGTTTGCAAGCTACAAATCGTGGATAACCAATGTGGATATTAGCCACAATCGTTTCAAGTTTAATATCACGGATTTGGATCCCCCTCGAGAGCTAGAGAGTCTTAATATAAGCCACAACAAAATATATGGGTCATTCCCTGTGAAATTAGGGTTTCAGCTTCCAGATTTCAGTATTGATGTGAGTTACAATAAGCTCCGTGGGCGTATCCCTAGTGGGTGGGAAAATTTTGACCCAATCTACTTCTCTCATAATAAGTGTCTTTGTGGTCCTCCGCTAGCTGCTTGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_199403.p1 GENE.R_Transcript_199403~~R_Transcript_199403.p1 ORF type:complete len:417 (+),score=14.60,LRR_8|PF13855.2|9.5e+03,LRR_8|PF13855.2|2.4e+02,LRR_8|PF13855.2|2.6e-08,LRR_8|PF13855.2|4.9e-07,LRR_8|PF13855.2|0.0026,LRR_8|PF13855.2|0.58,LRR_8|PF13855.2|2.8e+03,LRR_4|PF12799.3|4.2,LRR_4|PF12799.3|13,LRR_4|PF12799.3|2.2e-06,LRR_4|PF12799.3|2,LRR_4|PF12799.3|3.2,LRR_4|PF12799.3|1.8e+03,LRR_4|PF12799.3|2.1,LRR_1|PF00560.29|1.1e+04,LRR_1|PF00560.29|0.07,LRR_1|PF00560.29|14,LRR_1|PF00560.29|1.6e+04,LRR_1|PF00560.29|24,LRR_1|PF00560.29|0.038,LRR_1|PF00560.29|3.7e+02,LRR_1|PF00560.29|5.1e+03,LRR_1|PF00560.29|3.6e+03,LRR_1|PF00560.29|16,LRR_1|PF00560.29|1.6e+04,LRRNT_2|PF08263.8|6.9e-07,LRRNT_2|PF08263.8|1.1e+04 R_Transcript_199403:63-1313(+)
MVCPNHARIFHLQLLLLSLFLILFLSNKTVCSELCNPYDKNILLQIKNRLGNPSSLGSWDPNTDCCNDWYSYTTADITCDDQGHVIGLWLSSTDDISIDLLPALGDLPYLEYLKLDFISSLSNPIPTSVCTKFRKLWSLTIMSCDIYGPIPDCLSQFPNLKHLDLSYNRLSVQIPTTLGRIPNLLSLNLNGNKLSGSIPEFSSSRTSMYWLSVVFNQLSGSIPEHLGLMSNLSELFLSHNQFNGSIPASLGYVGSLRWLDLSSNQLTGPIPESFGSLTDSIILRLNDNRLTGQLPKSMSRFNPMELNLARNYNLTGDALFLFASYKSWITNVDISHNRFKFNITDLDPPRELESLNISHNKIYGSFPVKLGFQLPDFSIDVSYNKLRGRIPSGWENFDPIYFSHNKCLCGPPLAAC*

Click here to download the sequence:
Link to NCBI Protein BLAST