Transcript Information: R_Transcript_199404.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value6E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.78226975520223
Replicate 21.1497974037497
Replicate 30.49085866277469
Condition 2: 8 Hour
Replicate 10.17489903533747
Replicate 20.31944116915979
Replicate 30.69148992839569
Condition 3: 24 Hour
Replicate 11.1478903613852
Replicate 21.4703505927051
Replicate 31.1464988169327


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_199404.p1 GENE.R_Transcript_199404~~R_Transcript_199404.p1 ORF type:complete len:420 (+),score=9.92,LRR_8|PF13855.2|9.6e+03,LRR_8|PF13855.2|7.8e+02,LRR_8|PF13855.2|2.6e+02,LRR_8|PF13855.2|8.2e-08,LRR_8|PF13855.2|3e-05,LRR_8|PF13855.2|6.5,LRR_8|PF13855.2|0.023,LRR_8|PF13855.2|4.7e+03,LRR_4|PF12799.3|4,LRR_4|PF12799.3|13,LRR_4|PF12799.3|2.2e-06,LRR_4|PF12799.3|71,LRR_4|PF12799.3|0.4,LRR_4|PF12799.3|5.2e+02,LRR_4|PF12799.3|2.4,LRR_4|PF12799.3|9.6e+03,LRR_1|PF00560.29|0.071,LRR_1|PF00560.29|14,LRR_1|PF00560.29|6.5e+02,LRR_1|PF00560.29|0.76,LRR_1|PF00560.29|2.3e+02,LRR_1|PF00560.29|2.8e+03,LRR_1|PF00560.29|1.8e+03,LRR_1|PF00560.29|20,LRRNT_2|PF08263.8|6.9e-07,LRRNT_2|PF08263.8|1.1e+04,LRRNT_2|PF08263.8|1.6e+04 R_Transcript_199404:63-1322(+)
ATGGTTTGCCCAAACCATGCAAGGATTTTTCACCTCCAATTACTATTACTCTCCCTTTTTCTCATTCTTTTCCTCTCCAACAAAACTGTTTGCTCGGAGCTTTGCAATCCGTACGACAAAAACATCCTCCTTCAAATCAAAAACCGGTTAGGCAACCCGTCATCATTAGGATCATGGGATCCGAACACAGATTGTTGCAACGATTGGTATTCCTACACAACAGCCGACATTACATGCGACGATCAAGGTCATGTGATTGGCCTTTGGTTGTCTTCAACTGATGATATCTCCATTGATCTATTGCCGGCCTTGGGTGATCTACCTTACCTTGAGTATCTTAAGTTAGACTTCATATCAAGTCTCTCTAACCCAATCCCCACATCTGTGTGCACCAAGTTTAGAAAACTTTGGTCTCTTACCATTATGAGTTGTGACATTTATGGTCCAATTCCAGATTGCTTAAACCAAATCCCGAATCTAAAGCATCTAGACTTGTCCTATAATCGACTTTCCGTCCAAATCCCAACCACCCTTGGCCGAATCCCGAACCTCTTGTCCCTTAACCTCAATGGTAACAAACTATCTGGGTCCATACCCGAGTTCTCGAGCTCAAGGACCAGCATGTACTGGCTAAGTGTTGTCTTTAACCAATTGTCCGGCTCCATCCCAGAGCATCTTGGGCTCATGTCTAACTTTAGCCAACTTTTCCTTTCCCATAACCAATTCAATGGTTCTATCCCGGCCTCTCTTGGATACATAGAAAGCCTACGTTGGTTGGATCTTTTTTCGAACCAACTAACTGGACCGATCCCTGAGAGTTTCGGGTCATTACCGGATTCCATAATCCTTAGGTTGAATGACAATCAATTGACCGGCCCACTTCCGAGATCTATGAGCCGGTTTAATCCGATGGAGCTGAATCTTGCTAGGAATTATAACCTCACTGGAGATGCCTCGTTTTTGTTTGCAAGCAACAAGTCTTGGATAAACAGTGTCGATCTTAGCCACAATCGTTTCAAGTTTAATATCACAGATTTGGACCCCCCTCGAGAGTTAAGGAGACTCAATATAAGCCACAACAAAATATATGGGTCATTCCCTGTGAAATTAGGGTTTCAGCTTCCAGATTTCAGTATTGATGTGAGTTACAATAAGCTATCCGGGCAGATCCCTAGTGGTCAAGGGTGGGAAAATTTTGACCCAGTCTACTTCTCTCATAATAAGTGCCTTTGTGGTCTTCCGCTAGCTGCTTGTAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_199404.p1 GENE.R_Transcript_199404~~R_Transcript_199404.p1 ORF type:complete len:420 (+),score=9.92,LRR_8|PF13855.2|9.6e+03,LRR_8|PF13855.2|7.8e+02,LRR_8|PF13855.2|2.6e+02,LRR_8|PF13855.2|8.2e-08,LRR_8|PF13855.2|3e-05,LRR_8|PF13855.2|6.5,LRR_8|PF13855.2|0.023,LRR_8|PF13855.2|4.7e+03,LRR_4|PF12799.3|4,LRR_4|PF12799.3|13,LRR_4|PF12799.3|2.2e-06,LRR_4|PF12799.3|71,LRR_4|PF12799.3|0.4,LRR_4|PF12799.3|5.2e+02,LRR_4|PF12799.3|2.4,LRR_4|PF12799.3|9.6e+03,LRR_1|PF00560.29|0.071,LRR_1|PF00560.29|14,LRR_1|PF00560.29|6.5e+02,LRR_1|PF00560.29|0.76,LRR_1|PF00560.29|2.3e+02,LRR_1|PF00560.29|2.8e+03,LRR_1|PF00560.29|1.8e+03,LRR_1|PF00560.29|20,LRRNT_2|PF08263.8|6.9e-07,LRRNT_2|PF08263.8|1.1e+04,LRRNT_2|PF08263.8|1.6e+04 R_Transcript_199404:63-1322(+)
MVCPNHARIFHLQLLLLSLFLILFLSNKTVCSELCNPYDKNILLQIKNRLGNPSSLGSWDPNTDCCNDWYSYTTADITCDDQGHVIGLWLSSTDDISIDLLPALGDLPYLEYLKLDFISSLSNPIPTSVCTKFRKLWSLTIMSCDIYGPIPDCLNQIPNLKHLDLSYNRLSVQIPTTLGRIPNLLSLNLNGNKLSGSIPEFSSSRTSMYWLSVVFNQLSGSIPEHLGLMSNFSQLFLSHNQFNGSIPASLGYIESLRWLDLFSNQLTGPIPESFGSLPDSIILRLNDNQLTGPLPRSMSRFNPMELNLARNYNLTGDASFLFASNKSWINSVDLSHNRFKFNITDLDPPRELRRLNISHNKIYGSFPVKLGFQLPDFSIDVSYNKLSGQIPSGQGWENFDPVYFSHNKCLCGLPLAACK*

Click here to download the sequence:
Link to NCBI Protein BLAST