Transcript Information: R_Transcript_19942.p1


Annotated TAIR IDAT3G12590.1
Annotated Gene Nameunknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3996473-4003657 | Reverse length=1184
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.2412215643495
Replicate 21.9695324831123
Replicate 33.3118174837811
Condition 2: 8 Hour
Replicate 11.9175677368325
Replicate 22.5401345981381
Replicate 34.6706812181546
Condition 3: 24 Hour
Replicate 14.3268156479064
Replicate 23.9669097316099
Replicate 34.1439716274676


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_19942.p1 GENE.R_Transcript_19942~~R_Transcript_19942.p1 ORF type:5prime_partial len:1162 (+),score=249.38 R_Transcript_19942:3-3488(+)
ACTCTACTATCCAAATCTGTTTGGGGAGGGATAATATTATCTCCACCTGCTCTAGTGGAAGAGTTTGAGGAAGCCTTGAATGTTAAGCTTGAGGATTATTTGGCATCCCCTTCAACAACTGACCTCGCGTACTGTGTGATTTTAGAACATACTCTTGCAGAGAAAGAGCGCAGCCCTGCAGTTGTTGGAAGGTGTGTGGCACTCTTAAAGCGTTATTTGTTAAGATATAAACCCAGTGAAGAGACACTGCTGCAGATTGATAGATTTTGTGTACATATCATTGCTGAATGCGATATTGGCCTGAACCGAAAATTGTTGCCTTGGTCACATTCCTTCGGCCAACAATCTAATGCTTCTGCAAATGCACCCCCAAATAGTTCTGCCCCGTTGCCTGTTTCTAGCTTTGCTTCTGGGGCACTTATCAAGTCACTAAATTATGTTCGGTCTTTGGTCGCCCAGCATATTCCAAGGCGGTCGTTTCAACCAGCCGCTTTTGTGGGAGGCCCTTTTGCATCAAGACAGTTCCTTCCTTCATTGTCATCCTTATTGAGTAGGTCTTTTAACTCTCAATTGAGTCCTGCAAATAGTGGGGAGTCACCAGGAAGGAAAGATGTTAACTTATCTGTGCCAAGTCAAAGAAAGACTGAAAGTATTGATGGAACTGAGGACATAGAGTATATTAGTTATGATGTTTTGAAATGGCGCTGGGCGACTGATCAACTGTCCAAAGCTACTTTAGTTGATTGTGATCATAATTTGAATGCCGAAGACTTAAGCAGACCTAGTTTGCTTGAAGTGGGTGCAGCTTCTCTATTGGTTGCTGACATGGATGCTAAAAAAGGCCAGCCATGGAAGCATTTTGGTACTGCTAATATGCCTTACCTTGATCAACTGTTGCAGCCTTCCTCAATGTCATCAGGCACTAACTGTGCCTCTGCTCGGCACCACTTGAGAATTATAACAGCATCAAAACGAACCAAATCGGGGTCCCAACAGATATGGGAGGATTGTTCAGTGAGCACATTCCGTCCACGGGCTCGGCCACTGTTCCAATACCGTCATTACAGTGAGCAGCAGCCCTTGAAATTGAATCCTACCGAGGTGGGTGAGGTTATAGCAGCTGTTTGCTCGGACACATCCCTGCCAAATGCAAATGTAATGACAATTTCAACTGGTTTGAGCAACCACCGCGCAAAGCCATCAATTGATGTGGCTGTCAGTGTCCTTATCAAACTTGTTATTGACATGTATGTTTTAGATTCTGAATCTGCTGCTCCACTTACTCTGTCTATGCTAGAGGATATGGTTAGTTCCTCAAGATTGTCTTCTAGGACTCGTGCCTTTGACTTGATTTTGAACCTTGCTGTTCATGCTCACCTGTTGGAGCCTGTCATGCCTGATGATGTTTCAACCATTGAAGAAGATTATTCCGTAGAATCATCCTTTGACAATGAGGCGCAACTTGGGACTCAAAGAAATAGAACAAATTCTTACAAGAAGACAGGCGATTCCTCAGCAATTGATAATTTTGAGTCCTGGATTCTGAACATTCTCTATGAGATTCTCATTCTCCTTGTTCAGATTGAAGAGAAAGAGGAATCTGTGTGGGTGTCTGCTGTAAGTTGTTTACTTTATTTCGTCTGTGATAGAGGCAGAATAAGGAGGAGTCGACTGAAAGGCCTTGATATAAGGGTTATGAAGGCATTGATAGAAATCAGTAGGTTGAGTTCATGGGCTGAAGCTGTCCATTCAAAGCTCATTTCAATGTTAGCAAGAATGTTTTATGAACTTCCTGATGAACATGATACCGCTATTTTAACATCCCCCAAGTTTCTTGCGGAGCAGGTTGATTTGATTGGTGGAATTGATTTTATCTTCCTTGAGTATTCACTCTCTAAAACACAGGAGGAAAGGAGAAATTTGTACTCGTTGCTTCTTGACTACGTCTTACATCAAATTAGTGTAGCAAATATTGCTACTGGTGTTCCGGAGTATGGGATGGACGAGATTCAACCCCTTGCAACTTTGCTTTCTCTTGCTAATGCTGCTGAAGCCTTTCACATTTCTGTTAAGCTAGGGGTTGAAGGCATTGGGGAGATCTTGAGAAGATCTGTATCTTCTGCGTTGTCCAGATATTCTGACAGTGAACAACAGAACATTATCCTTGAGAAGATCACCAGCAAGTTCGATTCAATTATAAGTTCATTTACTCATTTAGAGAAAGAGTTTTCCAATATGAGACAGATCACCAAATCATGTAAACTTCTGAAAAGCATTGAGGATGGGGCCATAGGAAGGGGTATTAGTAGGAAAGCTAAATTATCATGGGCCACTCTGCATTCGCTTCTTCATTCAGACAGAGTAGCCTGCCGCAAGAATGGGTACATCTGGTTGGGTGATCTTTTGATTTCTGAAATCAGTGAGGAGAGGGGTGGAAATGTGTTGTCCAATATCAGCAGCTTGAAGCAGCAAATAGCTTTAGCTGGTTTCAAAGATCCTTCTGCTCTCCCAGATATTCCACTGTCCATCTGGCTTATGTGTGGCTTGCTGAAGTCAAAGAACAGTGCAATCAGAGCGGGCTTCCTTTTTGTTTTGGAAGTTCTTCTAATGCGATGCAAGTTTCTTTTGGATGAGAGTAAGACAGAGCATTCAGCAAGCAGCACTTCTGAGCCTTATGGCGATCGTTGTCTGGTAAAAGCAAATTCAGTGATAGATATCATGAACAGTTGCTTGTCACTGGTAGCTGAAATAAATGAGACAGATCACTTCAACATTCTGAAGATGTGCGACATCCTGTTCTCCCAACTCTGCCTTAAAGTTCCTCCAGCATCTGTGACGACAACTGGAGATGCAGGTCAAACTAGTAGAGGTTCAAGTAGCATGGATCCAAATAACAAGGTAGATATAGGCGAATGTATTCCCCTTGAAGAGAATATTCAACGAAGAGGACTGGAGGATGTTGATAACTTCTTTAGTTCACTGGTTTGTGAGACTTCATCAGTCGCGGCTTTGCTTCTTCAAGGAAGAGCTGTTGTTCCTCTGCAGTTGGTTGCACGTGTTCCAGCTGTGTTATTTTATTGGCCACTGATTCAACTTGCTGGCGCAGCCACAGACAATATTGCTTTGGGAGTTTCTGTTGGCAGCAAAGGAAGGGGAAACCTACCAGGTGCGACTTCAGACATTCGTGCTGCCCTTCTTTTGCTTCTAATTGCTAAATGCACAGCAGACCCTACTGCTTTTGAGGATGTTGATGGAGAAGATTTTTTCAGTCAACTTCTAGATGATCCAGACTCTAGAGTGGCTTATTACTCTGCAGCATTCCTTTTGAAGAGAATGATGACGGCGGATTTTGACAATTACCAACGTAGGCTTCAGAAACTCGTTCTCAAAGCCCAGCAGAGTAATAATGAAAAGCTGTTGGAAAACCCATATCTACAAATGCGAGGGATACTTCAGTTGTCAAATGATCTTGGAAGTGGGTTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_19942.p1 GENE.R_Transcript_19942~~R_Transcript_19942.p1 ORF type:5prime_partial len:1162 (+),score=249.38 R_Transcript_19942:3-3488(+)
TLLSKSVWGGIILSPPALVEEFEEALNVKLEDYLASPSTTDLAYCVILEHTLAEKERSPAVVGRCVALLKRYLLRYKPSEETLLQIDRFCVHIIAECDIGLNRKLLPWSHSFGQQSNASANAPPNSSAPLPVSSFASGALIKSLNYVRSLVAQHIPRRSFQPAAFVGGPFASRQFLPSLSSLLSRSFNSQLSPANSGESPGRKDVNLSVPSQRKTESIDGTEDIEYISYDVLKWRWATDQLSKATLVDCDHNLNAEDLSRPSLLEVGAASLLVADMDAKKGQPWKHFGTANMPYLDQLLQPSSMSSGTNCASARHHLRIITASKRTKSGSQQIWEDCSVSTFRPRARPLFQYRHYSEQQPLKLNPTEVGEVIAAVCSDTSLPNANVMTISTGLSNHRAKPSIDVAVSVLIKLVIDMYVLDSESAAPLTLSMLEDMVSSSRLSSRTRAFDLILNLAVHAHLLEPVMPDDVSTIEEDYSVESSFDNEAQLGTQRNRTNSYKKTGDSSAIDNFESWILNILYEILILLVQIEEKEESVWVSAVSCLLYFVCDRGRIRRSRLKGLDIRVMKALIEISRLSSWAEAVHSKLISMLARMFYELPDEHDTAILTSPKFLAEQVDLIGGIDFIFLEYSLSKTQEERRNLYSLLLDYVLHQISVANIATGVPEYGMDEIQPLATLLSLANAAEAFHISVKLGVEGIGEILRRSVSSALSRYSDSEQQNIILEKITSKFDSIISSFTHLEKEFSNMRQITKSCKLLKSIEDGAIGRGISRKAKLSWATLHSLLHSDRVACRKNGYIWLGDLLISEISEERGGNVLSNISSLKQQIALAGFKDPSALPDIPLSIWLMCGLLKSKNSAIRAGFLFVLEVLLMRCKFLLDESKTEHSASSTSEPYGDRCLVKANSVIDIMNSCLSLVAEINETDHFNILKMCDILFSQLCLKVPPASVTTTGDAGQTSRGSSSMDPNNKVDIGECIPLEENIQRRGLEDVDNFFSSLVCETSSVAALLLQGRAVVPLQLVARVPAVLFYWPLIQLAGAATDNIALGVSVGSKGRGNLPGATSDIRAALLLLLIAKCTADPTAFEDVDGEDFFSQLLDDPDSRVAYYSAAFLLKRMMTADFDNYQRRLQKLVLKAQQSNNEKLLENPYLQMRGILQLSNDLGSGL*

Click here to download the sequence:
Link to NCBI Protein BLAST