Transcript Information: R_Transcript_199477.p1


Annotated TAIR IDAT5G08450.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:2727970-2732572 | Reverse length=918
E-Value6E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 133.83009517262
Replicate 258.70169854609
Replicate 316.430487176298
Condition 2: 8 Hour
Replicate 154.612452709563
Replicate 223.531608639153
Replicate 318.246645230965
Condition 3: 24 Hour
Replicate 118.991275088886
Replicate 229.560975266952
Replicate 318.908226561979


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_199477.p1 GENE.R_Transcript_199477~~R_Transcript_199477.p1 ORF type:5prime_partial len:191 (-),score=56.30 R_Transcript_199477:7-579(-)
TCTGTTGATAGTAGTAGTAGAGATGTGAAGATGGAGTCGAGAGAGGTACATCATCATGTTGGGAAGTCGGAGAAGGATGTAAGAGTTGAGAGCCGGGGAGATGAGAGTAAAGAGACGAAGCATGATAGAGAGGGGCGTAATGATCAGAAAAGTGAAGTGAAGGTGGAAAAGGATGTTCATGGAGTTGGAGGGAGTCACTCTAATTGGAAGGACCATCATAGAGTGAAAAGACATCCAGATGTTCCTACTGGAAGTCCTGGAATTATGGGAGCTTGGAGTGGTTCTCAAATGCGTGCTAAATATGAAGCTCCCAAGGAAGTTGTTGTAGGCAATGTTATTAGGGATCGTGTGGAAGGAAGTGAGGCTGTTGGAGCGAATAAAGTTGATCCAAAAGGTGACGACAAGTACAAGGATAAGGATAGGAAAAGGAAAGAAGGAAAGCATCATGATTGGCCTGAAAGCGATAAAGATAGGAATGATTGCAGGAATAGTGTGCTAGTTGGTTGTAGTAATAATGATCACAAGGATGCAACAAGAGACGGGCCTGGCACTTGCCCCGACGGCCGGGTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_199477.p1 GENE.R_Transcript_199477~~R_Transcript_199477.p1 ORF type:5prime_partial len:191 (-),score=56.30 R_Transcript_199477:7-579(-)
SVDSSSRDVKMESREVHHHVGKSEKDVRVESRGDESKETKHDREGRNDQKSEVKVEKDVHGVGGSHSNWKDHHRVKRHPDVPTGSPGIMGAWSGSQMRAKYEAPKEVVVGNVIRDRVEGSEAVGANKVDPKGDDKYKDKDRKRKEGKHHDWPESDKDRNDCRNSVLVGCSNNDHKDATRDGPGTCPDGRV*

Click here to download the sequence:
Link to NCBI Protein BLAST