Transcript Information: R_Transcript_199517.p1


Annotated TAIR IDAT3G20730.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:7247095-7248878 | Forward length=564
E-Value3.6E-158
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.062941244671444
Replicate 20
Replicate 30.23696625099468
Condition 2: 8 Hour
Replicate 10.2533020511784
Replicate 20.38553244553768
Replicate 30.53202996645962
Condition 3: 24 Hour
Replicate 10.3166594100373
Replicate 20.22815785059218
Replicate 30.75474843747922


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_199517.p1 GENE.R_Transcript_199517~~R_Transcript_199517.p1 ORF type:complete len:580 (+),score=88.39,PPR|PF01535.16|87,PPR|PF01535.16|0.095,PPR|PF01535.16|7.7e-07,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.024,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|4.1e+02,PPR|PF01535.16|0.01,PPR|PF01535.16|9.2,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|9.3e-08,PPR|PF01535.16|0.1,PPR|PF01535.16|0.017,PPR|PF01535.16|31,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|5.4e-11,PPR_2|PF13041.2|0.63,PPR_2|PF13041.2|6.4e-10,PPR_2|PF13041.2|5.6,PPR_2|PF13041.2|6.1e-05,PPR_2|PF13041.2|0.00023,PPR_2|PF13041.2|4.2e-12,PPR_2|PF13041.2|0.0079,PPR_2|PF13041.2|0.44,PPR_1|PF12854.3|5.6,PPR_1|PF12854.3|64,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|4.5e+03,PPR_1|PF12854.3|28,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|0.029,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|7.5,PPR_1|PF12854.3|0.022,PPR_3|PF13812.2|8.1e+03,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|17,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|49,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|7.8e-05,PPR_3|PF13812.2|4.8,PPR_3|PF13812.2|8.6,PPR_3|PF13812.2|46 R_Transcript_199517:262-2001(+)
ATGGGTAGATTAGATGAAGCTTTCAAGCTCTTTTTCAGAAACCCAATTCCTTCGGACACATCGTTTTACTTAAAATTACTAGATCTATGCATCGAAGCAAGAGCCAACAAACATGGCCGTCTAATTCATGCACACCTGTTCTATAATGGTTTTGAATCAAATTTGACATTGAATACCAAAATGATCATATTCTATAGCAAAGTTGGTGACATGGGTAATGCTCACACGGTGTTTGATAAAATGCCTGAACGAAATATTGTATCTTGGACTGCCTTGTTATCTGGGTACTCCCAAAATGGGTTCTTTAAGGATGCCCTGATGGTTTTTCAGAATATGCATCATTCAGGGTTGAAGTGTAATCAGTTTACTTATGGCAGTGCCTTGAGGGCATGTACCAAGTTGATGTGTCTAAGGAGCGGAAAACAAATACAAGGGTGTTTGCAAAAGAGTAGGTTTGTTGGTAATGTGTTTGTGCAGAGTGCATTGGTTGACCTCCATTCCAAGTGCGGAGATATAGAGGATGCTAGTTATGTCTTTAAGATGATGCATGAGAGGGATTTGGTTTGCTGGAATGCTATGATTGGTGGATATTCTGTTCAAGGGTTTCCAAATTATGCATTTGGAGTCTTCCAGTCTATGCTTAGAGAAGGTATAATACCTGATTGCTATACTTTTGGGAGCTTACTGAGTGCCTGTGCTCAAGGCGTCCATGTCTCCAATGTTAGTCAACTCCACGGGATTATTGTACAGCATGGTTTTGGGTCACATAATATGCTTAACAGATTGTTGATTTCTGTGTATACAAAATGTGGAAGCATGAGACATGCTTATACTGTGTTTAAGAGCATGGTGGTTAAAGATGTAATGTCATACACTGCTATGATTGCTGCATGTGCACATGACAGTGAACATTATATTGAGGCTTTCAATCTCTTTAGTGAAATATTTCGAAGTGGCGAGACACTGGATGACTTTCTACTCTGCACAATGCTTAATGTATGTGCCAACTCGTCTTCACTGATTGTTGGAAGACAAATTCATGCTCTTGCATTGAAGTGTGTGCCTACGTATGATGTGGCTATGAGTAATTCACTCATTGATATATACGCCAAATGTGGAGAACTTGAAGAAGCCGAGTACATTTTTTATCAGATGCAGGAAAGGAATGTTATCTCATGGTCATCCCTAATCAATGGATGTGCCAAACATGGCTATGTAAAAAAAGCGTTTGTATTATACAGGATGATGGAAAGTGAGGGCCACAAACCAAATGATGTTACATTCTTGTCTCTTTTGTTTGCTTGTAGTCATGCAGGATTGACTAAGGAAGGTTGGGAATGCTTTCATAATATGACTGGCAAATACAATATTGCTCCAACTGAAAATCATTATTCATGTATGGTAGATCTCTTTGCTCGTGGTGGCCAGTTAAAAGAAGCAGTAGATCTGATGCAGAATATGAATATCCCATTGACTGCCTCGCTTTGGAGTGCAATTCTTAGCGCTTCTAATGTCTATGGAGATATGTCTCTAGGAAAAGAAGCAGCCAAGTGCCTTCTTGATTTGGATGGTGAAAATTCTGCTCCTTATGTTGCTCTGGCTAGTGCATATGCTGCGGTTGGTTTGTGGGATGATTCCCAGGTGATTCATGAACTTATGGAACTGAAAAAATTGAAAAAGAGCCCTGGCCTCAGTCTTGTCTTGTCACCTGACAAGAGAATAGAAGTGCTGCAAGGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_199517.p1 GENE.R_Transcript_199517~~R_Transcript_199517.p1 ORF type:complete len:580 (+),score=88.39,PPR|PF01535.16|87,PPR|PF01535.16|0.095,PPR|PF01535.16|7.7e-07,PPR|PF01535.16|2.3e+03,PPR|PF01535.16|0.024,PPR|PF01535.16|3.8e-06,PPR|PF01535.16|4.1e+02,PPR|PF01535.16|0.01,PPR|PF01535.16|9.2,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|9.3e-08,PPR|PF01535.16|0.1,PPR|PF01535.16|0.017,PPR|PF01535.16|31,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|5.4e-11,PPR_2|PF13041.2|0.63,PPR_2|PF13041.2|6.4e-10,PPR_2|PF13041.2|5.6,PPR_2|PF13041.2|6.1e-05,PPR_2|PF13041.2|0.00023,PPR_2|PF13041.2|4.2e-12,PPR_2|PF13041.2|0.0079,PPR_2|PF13041.2|0.44,PPR_1|PF12854.3|5.6,PPR_1|PF12854.3|64,PPR_1|PF12854.3|0.0027,PPR_1|PF12854.3|4.5e+03,PPR_1|PF12854.3|28,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|0.029,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|7.5,PPR_1|PF12854.3|0.022,PPR_3|PF13812.2|8.1e+03,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|17,PPR_3|PF13812.2|2.8e+02,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|49,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|7.8e-05,PPR_3|PF13812.2|4.8,PPR_3|PF13812.2|8.6,PPR_3|PF13812.2|46 R_Transcript_199517:262-2001(+)
MGRLDEAFKLFFRNPIPSDTSFYLKLLDLCIEARANKHGRLIHAHLFYNGFESNLTLNTKMIIFYSKVGDMGNAHTVFDKMPERNIVSWTALLSGYSQNGFFKDALMVFQNMHHSGLKCNQFTYGSALRACTKLMCLRSGKQIQGCLQKSRFVGNVFVQSALVDLHSKCGDIEDASYVFKMMHERDLVCWNAMIGGYSVQGFPNYAFGVFQSMLREGIIPDCYTFGSLLSACAQGVHVSNVSQLHGIIVQHGFGSHNMLNRLLISVYTKCGSMRHAYTVFKSMVVKDVMSYTAMIAACAHDSEHYIEAFNLFSEIFRSGETLDDFLLCTMLNVCANSSSLIVGRQIHALALKCVPTYDVAMSNSLIDIYAKCGELEEAEYIFYQMQERNVISWSSLINGCAKHGYVKKAFVLYRMMESEGHKPNDVTFLSLLFACSHAGLTKEGWECFHNMTGKYNIAPTENHYSCMVDLFARGGQLKEAVDLMQNMNIPLTASLWSAILSASNVYGDMSLGKEAAKCLLDLDGENSAPYVALASAYAAVGLWDDSQVIHELMELKKLKKSPGLSLVLSPDKRIEVLQG*

Click here to download the sequence:
Link to NCBI Protein BLAST