Transcript Information: R_Transcript_200116.p1


Annotated TAIR IDAT5G49100.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19897700-19898890 | Reverse length=396
E-Value1E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.237488878286
Replicate 20.88967374645331
Replicate 30.97062447441324
Condition 2: 8 Hour
Replicate 11.4525513104298
Replicate 20.94749499327058
Replicate 31.0767904605314
Condition 3: 24 Hour
Replicate 12.0428557278889
Replicate 21.1214538418938
Replicate 31.4839121821625


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_200116.p1 GENE.R_Transcript_200116~~R_Transcript_200116.p1 ORF type:internal len:236 (-),score=40.24 R_Transcript_200116:1-705(-)
GGTGGAGGGGCGGAGGGAAAGAGAGGAGGAAGAGTTGAGGCGGATGGTATGCAATGCACTGACCACCCGTTCAGAAGCAACTCTCCTGGTGGGATCTGCGCTTTTTGCTTACAAGACAAACTAGGGAAGCTCGTTTCCTCTTCTTCTTCTTCTCCTTCCTTCAGATCTGACATCTCTACTATCCGCCTCAACTCTTCCTCCTCTCTTTCCCTCCGCCCCTCCACCACCGCAGTCGCCGCCGCCTCTTCCACCACCACCACCTTTTTGAATAATACTAGCAATGTCGAGGAAAATAGCAACCGTGGGCATGGTAGTCGTTATCAAGAAGGTTATTATACATCAACAAGGAGGGCCCGGATACCTTTTTTACTAACTCAAAAGAAGAAGAAAAAGGCCCTCATGAGTGGGAGTGCTTCTACTACTACTACTAGTTCAACTTCTTCTGAGATGGTCCTCAAAAGAAGCAAGTCCACTGCTACCCCTCGATCTGGCCGTTATTTCCCTTCTGATGCAGACGACTTCAGCCCTAGGCGAAGGGGCTTTTGGTCTTTTCTCCACCTCAACAATCACAAGAAGCCCTCTGACCGTTCCATAAAAATCGGCCCAGGCCCAGTCCCTAACCCAAACCTAGACCAAAGTCAACGCCCATCCACGGTTGAGACGAAGAAGGTGGAGTACGTGACAGTGGATGAGGGGACGGACAGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_200116.p1 GENE.R_Transcript_200116~~R_Transcript_200116.p1 ORF type:internal len:236 (-),score=40.24 R_Transcript_200116:1-705(-)
GGGAEGKRGGRVEADGMQCTDHPFRSNSPGGICAFCLQDKLGKLVSSSSSSPSFRSDISTIRLNSSSSLSLRPSTTAVAAASSTTTTFLNNTSNVEENSNRGHGSRYQEGYYTSTRRARIPFLLTQKKKKKALMSGSASTTTTSSTSSEMVLKRSKSTATPRSGRYFPSDADDFSPRRRGFWSFLHLNNHKKPSDRSIKIGPGPVPNPNLDQSQRPSTVETKKVEYVTVDEGTDS

Click here to download the sequence:
Link to NCBI Protein BLAST