Transcript Information: R_Transcript_200135.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value2E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.2556437108504
Replicate 20.29406583216104
Replicate 30.51331624865328
Condition 2: 8 Hour
Replicate 10.13717571399017
Replicate 20.62635523364666
Replicate 30.40675878140923
Condition 3: 24 Hour
Replicate 10.70738341597968
Replicate 20.43245605667799
Replicate 30.30655048581089


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_200135.p1 GENE.R_Transcript_200135~~R_Transcript_200135.p1 ORF type:3prime_partial len:357 (+),score=38.04,SEO_N|PF14576.2|2.9e-44 R_Transcript_200135:83-1150(+)
ATGGAAGATTTGGATATTGATGACATACTAAAAACCCATCAAACACCCACTATCAACGACGTGGACGTCAGTCTGATTTTCAACTTCGTGGAAAATGTCCTCCAACATCATTTAAATTGTGAAGAAGAGGATATAGATACCAGGGAGATCAGGGAATCTGCTATCGAGGGGAATGAAATGCTGGAGAAATTAGCTCCTATCATACATAAGGTTTCGTCTAAGATATCTACAGACATTTCTCCGCCTAAGGACGACGCATATTGGAATATTTATGTTGAGAAATTAGAAGAGACAGCAATGTCAGTACTGAGAATGTTGTCCAACTACTCATGGGATGCAAAGATGATGATTACAGTTGCAGCCTTTGCATTAGTGTATTCAGAGTGTGGTCTGTTAGTTGAGTTGAATCAGCAGCAGCAGCAGCAGCAGCAGAATAATAACCAAAATCCTTTTGTCATTTCGGTGGCTGCCCTGAAGCGAATTCCAGACTTAACCAAGCACCCGCTTAACGCGAGGGATGAAGTCAAGAAATTTCTACGCAATCTCAGCCGAGCTATTGGCGTAATGTTGGATGTGGCCATCAAGATTATTGAAGTTACGAAACTGCCTCCTAAATACATCTCCACTGAACATCCACCTTTGTCCATTCTTATGAAACAAGTGATTCCTAGTGCTGTTCATGAAACTATCAGGGCTGCCGCATATTACGCGTGCGAAATAGCTTCGCCTAATGGAACAATTTTTAGAGATACGTATACTAACGGCCTTGGAATTCCGTGGCATATTATTTTCCGGGAATACCATGGCAAACTTATCGAAGGACTTGATGGCTGCTATAAGCATATAGAAAAAATTAAGTCTGAGGAGGCCTACCGTAATCTTATAAGTCTATTTGAAAAGACTCACACCGACAACACCAATGTTCTCAAGCATCTGATATACCTTGGGGAGGACATACTTCATCCCCTAGTGGAAGGCTCCAAAAAATTACCGGTTTCTATTGAGGAACTGAAGACAAAGACTGTTCTATTGCTCATATCAGACCTCAACATCTCCCATGAAGAGTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_200135.p1 GENE.R_Transcript_200135~~R_Transcript_200135.p1 ORF type:3prime_partial len:357 (+),score=38.04,SEO_N|PF14576.2|2.9e-44 R_Transcript_200135:83-1150(+)
MEDLDIDDILKTHQTPTINDVDVSLIFNFVENVLQHHLNCEEEDIDTREIRESAIEGNEMLEKLAPIIHKVSSKISTDISPPKDDAYWNIYVEKLEETAMSVLRMLSNYSWDAKMMITVAAFALVYSECGLLVELNQQQQQQQQNNNQNPFVISVAALKRIPDLTKHPLNARDEVKKFLRNLSRAIGVMLDVAIKIIEVTKLPPKYISTEHPPLSILMKQVIPSAVHETIRAAAYYACEIASPNGTIFRDTYTNGLGIPWHIIFREYHGKLIEGLDGCYKHIEKIKSEEAYRNLISLFEKTHTDNTNVLKHLIYLGEDILHPLVEGSKKLPVSIEELKTKTVLLLISDLNISHEEL

Click here to download the sequence:
Link to NCBI Protein BLAST