Transcript Information: R_Transcript_200136.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value1E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.99944166610852
Replicate 20.90762105545957
Replicate 30.52810922411879
Condition 2: 8 Hour
Replicate 10.91733787986798
Replicate 20.51552465339909
Replicate 31.2554428094792
Condition 3: 24 Hour
Replicate 11.0585732439287
Replicate 20.57203841502938
Replicate 31.0723082987817


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_200136.p1 GENE.R_Transcript_200136~~R_Transcript_200136.p1 ORF type:3prime_partial len:347 (+),score=44.99,SEO_N|PF14576.2|2.6e-42 R_Transcript_200136:83-1120(+)
ATGGAAGATTTGGATATTGATGACATACTAAAAACCCATCAAACACCCACTATCAACGACGTGGACGTCAGTCTGATTTTCAACTTCGTGGAAAATGTCCTCCAACATCATTTAAATTGTGAAGAAGAGGATATAAATACCAGGGAGATCAGGGAAGCTGCTATCAAGGGGAATGAAATGCTGGAGAAATTAGCTCCTATCATACATAAGGTTTCGTCTAAGATATCTACAGACGTTCCTACGGCTACGGACAATGATGTTCCACATATTGAGAAAGTAAGACAGACAGCAATGTCAGTACTGAGAATGTTGTCCAACTACTCATGGGATGCAAAGGTGGTAATTACAATTGCAGCCTTTGCATTGGTGTATTCAGAGTTTGGTCTTTTAGTTCAGTTGAATCAGCAGCAGAAGCAGAAGAATAATAACCAAAATCCTTTTGTCATTTCGGTGGCTGTCCTGAAGCAAATTTCAGACTTAACCCACCCGTTTAACACGATCCATGGAGTCGAATTTCTAGGCTTTCTCAGTCAAGACATTGGAAGAATGTTGGATATGACCGTCAAGATTATTAAGGTTATGAAACTGCCTCCTAAGTACATCTCCACTGACCATCCACCTTTGTCTTCTCTTATGAAACAAGTGATTCCTAGACTTGTTCGGCACACTATCGAGGCTGCCTTATTTTACACGTGGGAAATAGCTTCGCCTAAAGGAACAATGTTGAGAGATATGAATTATCCCCGCTTTTGGATTTACAACTTGGTTTACAATGGCCAACTTATCAAAGCACTTGATGATTGCTATAAGCATATAGATAAAATGAAGTCTGAGGAGGCCTACAGTAATCTTTTAAGTATATTTGAAAAGACTCACACTGACAACACCAATGTTCTCAAGCATCTGATATACCTTGGGGAGGACATACTTCATCCCCTAGTGGAAGGCTCCAAAAAATTACCGGTTTCTATTGAGGAACTGAAGACAAAGACTGTTCTATTGCTCATATCAGACCTCAACATCTCCCATGAAGAGTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_200136.p1 GENE.R_Transcript_200136~~R_Transcript_200136.p1 ORF type:3prime_partial len:347 (+),score=44.99,SEO_N|PF14576.2|2.6e-42 R_Transcript_200136:83-1120(+)
MEDLDIDDILKTHQTPTINDVDVSLIFNFVENVLQHHLNCEEEDINTREIREAAIKGNEMLEKLAPIIHKVSSKISTDVPTATDNDVPHIEKVRQTAMSVLRMLSNYSWDAKVVITIAAFALVYSEFGLLVQLNQQQKQKNNNQNPFVISVAVLKQISDLTHPFNTIHGVEFLGFLSQDIGRMLDMTVKIIKVMKLPPKYISTDHPPLSSLMKQVIPRLVRHTIEAALFYTWEIASPKGTMLRDMNYPRFWIYNLVYNGQLIKALDDCYKHIDKMKSEEAYSNLLSIFEKTHTDNTNVLKHLIYLGEDILHPLVEGSKKLPVSIEELKTKTVLLLISDLNISHEEL

Click here to download the sequence:
Link to NCBI Protein BLAST