Transcript Information: R_Transcript_201406.p1


Annotated TAIR IDAT2G43870.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:18166615-18168264 | Reverse length=384
E-Value5.3E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.64305824501719
Replicate 20.2276021725344
Replicate 30.18623363899311
Condition 2: 8 Hour
Replicate 10.33178678790305
Replicate 20.36359157465342
Replicate 30.39353085355853
Condition 3: 24 Hour
Replicate 10.74659535699851
Replicate 21.0160959380483
Replicate 30.88974409296331


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_201406.p1 GENE.R_Transcript_201406~~R_Transcript_201406.p1 ORF type:complete len:369 (+),score=-2.89,Glyco_hydro_28|PF00295.13|4.9e-77,Pectate_lyase_3|PF12708.3|3.1e-09 R_Transcript_201406:44-1150(+)
ATGAGGTCCACAATCCAATTGATCCTCCCACTTTTCCTATTTCCTTTCCTTAGCCTAAGTGCCCAACCAATACTAGCAAAAAACTACAATATAGCAAGTCTTGGAGCAAAACCAGATGGCATAAGTGACTCCTCCAAGGCTTTCCTAGCCGCATGGAGCTCGGCCTGCAGGTCCCCGGCCCGGTCCACGATTGTGGTCCCCAAGGGCCGGTTCATGGTGGGGACCGCGGTCACATTCTCGGGCCGGGGGTGCAAGAGCCGGGGCATAACGTTTGTGATTAAAGGCGCCCTTGTTGCCCCGGGTGACTTCCGGGCCCTAGCTAGATCCGGCCACACGTGGATGTCATTCGAGGATGTCAACGGGGTTACGATCTCTGGTGGGGTGTTCGACGCCCGTGGGGCCGGGCTGTGGGCGTGTAAGCGGTCCCACAAAGGTGGCTGCCCTAGTGGTATCACGACATTGGGGTTCTCAAGTTCAATGAATATTGTGATAAATGGTGTAACATCCCTAAACAGTCAATTATACCATATAGTTTTCAACGGTTGTAAGAACGTGAAAGTGGAAGGAGTTAAGATCTCAGCTTCAGGTGCCAGCCCAAATACTGACGGAATTCATGTACAACTTTCAACTGGTGTAACAATCTTGAGCACCAATATTGCCACCGGTGACGATTGTATCTCAATTGGTCCTGGTACTACTAACTTATGGATCGAGCAAATTGCTTGTGGTCCCGGCCATGGCATTAGCATTGGGAGCTTAGGAAAAGATCTAAAAGAGCCGGGAGTGCAAAATGTGACAGTAAAATCCTCGACGTTTACTGGCACAGAGAATGGGGTGAGAATAAAGTCATGGGGAAGGCTAAGTACTGGATTTGTGAGAAATGTTCTCTTCCAACATCTAACTATGGTGAATGCTCATAATCCGATCATCATTGACCAGCACTATTGCCCTGACCACATAGGTTGCCCAGGGCAGGTTTCCGGGGTAAGAGTAAGTGACGTAACGTATCAAGATATACATGGGTCATCCGCTACACCAGTTGCAGTAAATTTTGATTGCAGTTCAAGGTACCATTGTCATCATCATCATTACCCCAGTGCCCTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_201406.p1 GENE.R_Transcript_201406~~R_Transcript_201406.p1 ORF type:complete len:369 (+),score=-2.89,Glyco_hydro_28|PF00295.13|4.9e-77,Pectate_lyase_3|PF12708.3|3.1e-09 R_Transcript_201406:44-1150(+)
MRSTIQLILPLFLFPFLSLSAQPILAKNYNIASLGAKPDGISDSSKAFLAAWSSACRSPARSTIVVPKGRFMVGTAVTFSGRGCKSRGITFVIKGALVAPGDFRALARSGHTWMSFEDVNGVTISGGVFDARGAGLWACKRSHKGGCPSGITTLGFSSSMNIVINGVTSLNSQLYHIVFNGCKNVKVEGVKISASGASPNTDGIHVQLSTGVTILSTNIATGDDCISIGPGTTNLWIEQIACGPGHGISIGSLGKDLKEPGVQNVTVKSSTFTGTENGVRIKSWGRLSTGFVRNVLFQHLTMVNAHNPIIIDQHYCPDHIGCPGQVSGVRVSDVTYQDIHGSSATPVAVNFDCSSRYHCHHHHYPSAL*

Click here to download the sequence:
Link to NCBI Protein BLAST