Transcript Information: R_Transcript_202168.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value2E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.91838797256447
Replicate 20.66026101938044
Replicate 30.28813506410255
Condition 2: 8 Hour
Replicate 11.0009944789754
Replicate 20.49222066946006
Replicate 31.141610730842
Condition 3: 24 Hour
Replicate 10.93852671056652
Replicate 20.069356160033262
Replicate 31.1700974203687


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_202168.p1 GENE.R_Transcript_202168~~R_Transcript_202168.p1 ORF type:5prime_partial len:318 (+),score=33.91,UBN2|PF14223.2|8.9e-17,UBN2_2|PF14227.2|1.3e-14,UBN2_3|PF14244.2|4.3e-10 R_Transcript_202168:3-956(+)
TTGTCTGCTCCGTTTTCGGCTCAAATCGGTACCGGCCCTCTCGGTCCCCCCTTATCTGGTGGTCATGGTTCCCAATATTCTGGGCATGCTTTTCCCCCTGTTTCCGCTCCTAATGTCACCAACATCGTGACGACAACGCTCCACTCTGTTGAAGATTTCCTCTCATGGCGAACCCAATTTTCAGCTTTTCTTATCTTTCAAGGTCTAGGCGGGTATGTTGACGGCTCTATTCCTCCCCCCCTTGGGTCCTTTGTTGATTCATATGGTGTTATAAGGTACAATCCCGAATACTCCTCTTGGCTTCGTTTCGATCTAAGTGTTCGTTGTTGGTTGTATGCTACTTTCTCCAAAGAACTGTTAGTGGAGTTTCATGATGTTCAGCATTCCCATGATATTTGGACTAAATTGCATAACCGATTCAATACTGATAGTTTGGCTCGTTCAATTGAATTAAAACGCTCTCTCACTATGGTCAAGAAAACTGAACCGCAAACTATGGAAGCATATTTGCGTGATATTAAACGTATTGCTGATGCATTAGCTTCAATTCGTAGTCCAGTGTCTAATGATGATTTAGTTCAATATACTCTCATGGGACTCCCTGCTGAATATGAGACACTAGTCACTGTTTTGCTACACCAGTCTGCTACTCTTGTTTTTGATGATCTTCGCGCAAAATTAATTCATCATGAACAACTGTTACGTATGATGACAGCCCCTGATTCTAGTGTAGTCCATCAAGCACTTGCTGTTAGTACTCACAACAATGCTCGGAACAATAATTCTAGTGAGCCTAGTTCATCTCGCTCTAACAACAATGGGGGTGGTCGCGGCAACTCTCGTTGGTGCAACAATAATTATAGATATAACAGGGGCCGAGGTAGAGGTGGTCGTGGTCAGCAAGGTGGCCGATTCAACAACAACAATTTCAACTCTGCATCTACCAACAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_202168.p1 GENE.R_Transcript_202168~~R_Transcript_202168.p1 ORF type:5prime_partial len:318 (+),score=33.91,UBN2|PF14223.2|8.9e-17,UBN2_2|PF14227.2|1.3e-14,UBN2_3|PF14244.2|4.3e-10 R_Transcript_202168:3-956(+)
LSAPFSAQIGTGPLGPPLSGGHGSQYSGHAFPPVSAPNVTNIVTTTLHSVEDFLSWRTQFSAFLIFQGLGGYVDGSIPPPLGSFVDSYGVIRYNPEYSSWLRFDLSVRCWLYATFSKELLVEFHDVQHSHDIWTKLHNRFNTDSLARSIELKRSLTMVKKTEPQTMEAYLRDIKRIADALASIRSPVSNDDLVQYTLMGLPAEYETLVTVLLHQSATLVFDDLRAKLIHHEQLLRMMTAPDSSVVHQALAVSTHNNARNNNSSEPSSSRSNNNGGGRGNSRWCNNNYRYNRGRGRGGRGQQGGRFNNNNFNSASTNN*

Click here to download the sequence:
Link to NCBI Protein BLAST