Transcript Information: R_Transcript_203285.p1


Annotated TAIR IDAT1G16720.1
Annotated Gene Namehigh chlorophyll fluorescence phenotype 173
Annotated Gene Symbol(s)HCF173
Annotation TypeOrtholog
Chromosome Positionchr1:5723161-5726248 | Forward length=598
E-Value1.2E-296
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.7708789347099
Replicate 25.8265595572321
Replicate 36.9961464579382
Condition 2: 8 Hour
Replicate 12.6536405361546
Replicate 22.1296077943986
Replicate 32.8613376347408
Condition 3: 24 Hour
Replicate 18.5573435807698
Replicate 25.142605521284
Replicate 39.3085640622437


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_203285.p1 GENE.R_Transcript_203285~~R_Transcript_203285.p1 ORF type:complete len:609 (+),score=134.58,NAD_binding_10|PF13460.2|2.6,NAD_binding_10|PF13460.2|8.2e-08,NmrA|PF05368.9|4e-09,NmrA|PF05368.9|9.1e+02,CIA30|PF08547.8|2.7e+03,CIA30|PF08547.8|7.1e-09,Epimerase|PF01370.17|2.3e-05,Epimerase|PF01370.17|2.2e+03 R_Transcript_203285:261-2087(+)
ATGGCTGCTACAACAGCAGCAATGCATGTGTTAGCTCCTAGTAACACCACCAATCTCAACAACAATGGTGGGTTCATGAAAATCAGGAAAATGATGGTGTCAAGTGAAAGAATGAGAAGTACCCAGATTGTGTTTACACCTAAAGCATCAGCAACTGACGGACCATCAACCAGTAAGAGAAAGATCAGAAGTTCCCAGAAGAAGAACAGTGGGAAAAGCAAAAAGGAAGAGATTGTTGAAGATGGTGTGAAGGAAGATGAAAAGAGTGATGAAAATAATGAGGAATTGGAGAATAGTTCAAAGAATGTTGAAAGTGGGGTTATGAAGAACATTGAGGCAGTGAATCCAGTAGGGTTAGGGAGGAAATCAAGGCAGATTTTTGATCAAGTATGGAAGAAATTCTCAGGGTTGGGTCAGATTTCGAGGACCGAGTATGATGATGGTACTAGTAATAATTTGTTGGTGTATGGAGATGGAGCTCCCCTGTGTGAGTTCACTATCCCTGGTGCTCAGAACACTACTGTTCTTGTGGTTGGTGCCACCAGCCGTATCGGCCGCCTTGTTGTGAGGAAGCTCATGCTTAGAGGTTATACTGTCAAGGCCTTGGTGAGGAGAATAGATCAGGGAGTGACAGATATGCTCCCGAGATCTGTGGAACTGGTGATTGGTGATGTGGGTGATCCTTCTACCATACAAGCTGCGGTGGAAGGTTGCAACAAAATCATTTATTGTGCCACTGCACGTTCAGCGATTACTGGTGATCTCAACCGAGTTGATAATCGTGGTGTCTATCATGTCGCCAAAGCACTTCAGGACTACAACAATAAGTTGGCGCAGCTAAGAGCAGGAAAAAGCAGCAAAAGCAAGCTTCTAATTGCAAAATTCAAATCACCGGATTCACTTGAAGGATGGGAGGTACGGCAGGGGACCTATTTCCAGGATGTGGTGGCCACAAAATATGATGGAGGAATGGATGCAAAGTTCATATTTAATGAGAATGGACTTGCCATTTTCTCAGGATATGTTTTCACCAGAGGAGGATACGTGGAACTTTCGAGAAAGCTTTCACTCCCCCTGCGTTTTACTCTAGATCGGTATGAAGGTCTCATTCTTGCTGTCGGTGGCAATGGTCGATCATATGTTGTAATCCTTGAAGCTGGTCCCCTTTCAGATGCATCTAAGAGCAAAATGTATTTTTCTCGTATTAACACAAAAGCAGGATTTTGTAGGGTAAGAGTTCCCTTTTCATCATTCCGTCCAGTGAATCCGAATGATCCACCTCTAGACCCGTTTCTTGTGCACACTTTGACTATACGCTTTGAGCCTAGAAAACAGAGACCAGTTGAAGGACCAAAAGGAATGAAGCAAGACCCACGGAGTTTTGAGCTGATTCTGGAATACATAAAAGCCTTACCTAGTGGACAGGAAACAGACTTCATTTTGGTGTCGTGTACAGGCTCAGGAATAGAGGCTTCAAGAAGGGACCAGGTCTTGAAAGCTAAGAAGGCTGGGGAAGATTCATTAAGAAAGTCAGGACTCGGGTACACAATTGTCCGTCCTGGTCCCTTGAAGGAAGAACCTGGTGGGCAACGTGCTCTGATATTTGATCAGGGTAACAGGATTTCTCAGGGTATAAGTTGTGCTGATGTAGCTGATATCTGCGTGAAGGCATTGCACGATTCAACAGCCAGAAACAAGAGCTTTGATGTGTGCTATGAATATGTGGCTGAGCAAGGACAGGAGCTTTACGAGCTGGTGGCTCATTTGCCTGATAAGGCGAATAATTACTTAACGCCAGCGCTGTCTGCTCTTGAGAAGAACACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_203285.p1 GENE.R_Transcript_203285~~R_Transcript_203285.p1 ORF type:complete len:609 (+),score=134.58,NAD_binding_10|PF13460.2|2.6,NAD_binding_10|PF13460.2|8.2e-08,NmrA|PF05368.9|4e-09,NmrA|PF05368.9|9.1e+02,CIA30|PF08547.8|2.7e+03,CIA30|PF08547.8|7.1e-09,Epimerase|PF01370.17|2.3e-05,Epimerase|PF01370.17|2.2e+03 R_Transcript_203285:261-2087(+)
MAATTAAMHVLAPSNTTNLNNNGGFMKIRKMMVSSERMRSTQIVFTPKASATDGPSTSKRKIRSSQKKNSGKSKKEEIVEDGVKEDEKSDENNEELENSSKNVESGVMKNIEAVNPVGLGRKSRQIFDQVWKKFSGLGQISRTEYDDGTSNNLLVYGDGAPLCEFTIPGAQNTTVLVVGATSRIGRLVVRKLMLRGYTVKALVRRIDQGVTDMLPRSVELVIGDVGDPSTIQAAVEGCNKIIYCATARSAITGDLNRVDNRGVYHVAKALQDYNNKLAQLRAGKSSKSKLLIAKFKSPDSLEGWEVRQGTYFQDVVATKYDGGMDAKFIFNENGLAIFSGYVFTRGGYVELSRKLSLPLRFTLDRYEGLILAVGGNGRSYVVILEAGPLSDASKSKMYFSRINTKAGFCRVRVPFSSFRPVNPNDPPLDPFLVHTLTIRFEPRKQRPVEGPKGMKQDPRSFELILEYIKALPSGQETDFILVSCTGSGIEASRRDQVLKAKKAGEDSLRKSGLGYTIVRPGPLKEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAEQGQELYELVAHLPDKANNYLTPALSALEKNT*

Click here to download the sequence:
Link to NCBI Protein BLAST