Transcript Information: R_Transcript_203287.p1


Annotated TAIR IDAT1G16720.1
Annotated Gene Namehigh chlorophyll fluorescence phenotype 173
Annotated Gene Symbol(s)HCF173
Annotation TypeOrtholog
Chromosome Positionchr1:5723161-5726248 | Forward length=598
E-Value5.8E-263
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1093371973338
Replicate 22.2188519367381
Replicate 31.6981335441943
Condition 2: 8 Hour
Replicate 10.11586371426141
Replicate 20.38796482689754
Replicate 30.60123631392449
Condition 3: 24 Hour
Replicate 11.6294973584333
Replicate 21.0784117123153
Replicate 31.7952060626477


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_203287.p1 GENE.R_Transcript_203287~~R_Transcript_203287.p1 ORF type:3prime_partial len:634 (+),score=119.74,NAD_binding_10|PF13460.2|2.8,NAD_binding_10|PF13460.2|8.7e-08,NmrA|PF05368.9|4.2e-09,NmrA|PF05368.9|1.5e+03,CIA30|PF08547.8|2.3e+03,CIA30|PF08547.8|7.6e-09 R_Transcript_203287:54-1952(+)
ATGTGGCTGATAACTGGCTTTATTTTGCTGAATTGTCCATCTCTAACTGGGTTTGTTTTGGATTTAGATTCAAGGGACCTTGTAAATTGGTTTAAAAAAAAAAACAACATTCTAAACATTAATCACATATACTCAATTCATACCAATTTTTTTTTCCATAGCAAAAAATTCAATATTGAGTTTGCAACAACACTAACAAACATAAAAATGGCTGCTACAACAGCAGCAATGCATGTGTTAGCTCCTAGTAACACCACCAATCTCAACAACAATGGTGGGTTCATGAAAATCAGGAAAATGATGGTGTCAAGTGAAAGAATGAGAAGTACCCAGATTGTGTTTACACCTAAAGCATCAGCAACTGACGGACCATCAACCAGTAAGAGAAAGATCAGAAGTTCCCAGAAGAAGAACAGTGGGAAAAGCAAAAAGGAAGAGATTGTTGAAGATGGTGTGAAGGAAGATGAAAAGAGTGATGAAAATAATGAGGAATTGGAGAATAGTTCAAAGAATGTTGAAAGTGGGGTTATGAAGAACATTGAGGCAGTGAATCCAGTAGGGTTAGGGAGGAAATCAAGGCAGATTTTTGATCAAGTATGGAAGAAATTCTCAGGGTTGGGTCAGATTTCGAGGACCGAGTATGATGATGGTACTAGTAATAATTTGTTGGTGTATGGAGATGGAGCTCCCCTGTGTGAGTTCACTATCCCTGGTGCTCAGAACACTACTGTTCTTGTGGTTGGTGCCACCAGCCGTATCGGCCGCCTTGTTGTGAGGAAGCTCATGCTTAGAGGTTATACTGTCAAGGCCTTGGTGAGGAGAATAGATCAGGGAGTGACAGATATGCTCCCGAGATCTGTGGAACTGGTGATTGGTGATGTGGGTGATCCTTCTACCATACAAGCTGCGGTGGAAGGTTGCAACAAAATCATTTATTGTGCCACTGCACGTTCAGCGATTACTGGTGATCTCAACCGAGTTGATAATCGTGGTGTCTATCATGTCGCCAAAGCACTTCAGGACTACAACAATAAGTTGGCGCAGCTAAGAGCAGGAAAAAGCAGCAAAAGCAAGCTTCTAATTGCAAAATTCAAATCACCGGATTCACTTGAAGGATGGGAGGTACGGCAGGGGACCTATTTCCAGGATGTGGTGGCCACAAAATATGATGGAGGAATGGATGCAAAGTTCATATTTAATGAGAATGGACTTGCCATTTTCTCAGGATATGTTTTCACCAGAGGAGGATACGTGGAACTTTCGAGAAAGCTTTCACTCCCCCTGCGTTTTACTCTAGATCGGTATGAAGGTCTCATTCTTGCTGTCGGTGGCAATGGTCGATCATATGTTGTAATCCTTGAAGCTGGTCCCCTTTCAGATGCATCTAAGAGCAAAATGTATTTTTCTCGTATTAACACAAAAGCAGGATTTTGTAGGGTAAGAGTTCCCTTTTCATCATTCCGTCCAGTGAATCCGAATGATCCACCTCTAGACCCGTTTCTTGTGCACACTTTGACTATACGCTTTGAGCCTAGAAAACAGAGACCAGTTGAAGGACCAAAAGGAATGAAGCAAGACCCACGGAGTTTTGAGCTGATTCTGGAATACATAAAAGCCTTACCTAGTGGACAGGAAACAGACTTCATTTTGGTGTCGTGTACAGGCTCAGGAATAGAGGCTTCAAGAAGGGACCAGGTCTTGAAAGCTAAGAAGGCTGGGGAAGATTCATTAAGAAAGTCAGGACTCGGGTACACAATTGTCCGTCCTGGTCCCTTGAAGGAAGAACCTGGTGGGCAACGTGCTCTGATATTTGATCAGGGTAACAGGATTTCTCAGGGTATAAGTTGTGCTGATGTAGCTGATATCTGCGTGAAGGCATTGCACGATTCAACAGCCAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_203287.p1 GENE.R_Transcript_203287~~R_Transcript_203287.p1 ORF type:3prime_partial len:634 (+),score=119.74,NAD_binding_10|PF13460.2|2.8,NAD_binding_10|PF13460.2|8.7e-08,NmrA|PF05368.9|4.2e-09,NmrA|PF05368.9|1.5e+03,CIA30|PF08547.8|2.3e+03,CIA30|PF08547.8|7.6e-09 R_Transcript_203287:54-1952(+)
MWLITGFILLNCPSLTGFVLDLDSRDLVNWFKKKNNILNINHIYSIHTNFFFHSKKFNIEFATTLTNIKMAATTAAMHVLAPSNTTNLNNNGGFMKIRKMMVSSERMRSTQIVFTPKASATDGPSTSKRKIRSSQKKNSGKSKKEEIVEDGVKEDEKSDENNEELENSSKNVESGVMKNIEAVNPVGLGRKSRQIFDQVWKKFSGLGQISRTEYDDGTSNNLLVYGDGAPLCEFTIPGAQNTTVLVVGATSRIGRLVVRKLMLRGYTVKALVRRIDQGVTDMLPRSVELVIGDVGDPSTIQAAVEGCNKIIYCATARSAITGDLNRVDNRGVYHVAKALQDYNNKLAQLRAGKSSKSKLLIAKFKSPDSLEGWEVRQGTYFQDVVATKYDGGMDAKFIFNENGLAIFSGYVFTRGGYVELSRKLSLPLRFTLDRYEGLILAVGGNGRSYVVILEAGPLSDASKSKMYFSRINTKAGFCRVRVPFSSFRPVNPNDPPLDPFLVHTLTIRFEPRKQRPVEGPKGMKQDPRSFELILEYIKALPSGQETDFILVSCTGSGIEASRRDQVLKAKKAGEDSLRKSGLGYTIVRPGPLKEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTAR

Click here to download the sequence:
Link to NCBI Protein BLAST