Transcript Information: R_Transcript_204236.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.8761421258265
Replicate 20
Replicate 30.73301560307688
Condition 2: 8 Hour
Replicate 10
Replicate 20.35777410945897
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.35288414224924
Replicate 30.35020327499036


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_204236.p1 GENE.R_Transcript_204236~~R_Transcript_204236.p1 ORF type:complete len:125 (+),score=20.35,UBN2_3|PF14244.2|4.5e-22 R_Transcript_204236:785-1159(+)
ATGTCTTCAGGAAGAACATCAAATTTTAATTTTCAAGGTCTGCAGAATCCTCTTTTTGTTCATCCATCGGATGGCCCTAATTCAATCCCAATTAGCAATAAATTGATTGGAAAAAACAATTATAGAGCTTGGAAAAGATCAATGGAACTTAATCTTTCAACCAAAATAAAAATGGGTTTTGTCAATGGAACAGTCAAGAAATCTACTTTTGATGCTGTACAAGCTGAACAGTGGGAGACATGCAACAATCTGGTAATTTCTTGGTTGCTCAATTCTGTTTCTGAGTCAATTGCTCAATCTGTGTTGTATATGATAGTTGAATTCTATGTTTGGGTCGAGAATTCAAAGTGTAGGATTAATTTTGGGTTTTTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_204236.p1 GENE.R_Transcript_204236~~R_Transcript_204236.p1 ORF type:complete len:125 (+),score=20.35,UBN2_3|PF14244.2|4.5e-22 R_Transcript_204236:785-1159(+)
MSSGRTSNFNFQGLQNPLFVHPSDGPNSIPISNKLIGKNNYRAWKRSMELNLSTKIKMGFVNGTVKKSTFDAVQAEQWETCNNLVISWLLNSVSESIAQSVLYMIVEFYVWVENSKCRINFGFF*

Click here to download the sequence:
Link to NCBI Protein BLAST