Transcript Information: R_Transcript_204603.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.55841224511431
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.096551120321207
Condition 3: 24 Hour
Replicate 10.36634798767613
Replicate 20.11731520686477
Replicate 30.11642396110052


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_204603.p1 GENE.R_Transcript_204603~~R_Transcript_204603.p1 ORF type:complete len:188 (+),score=24.54,UBN2_3|PF14244.2|4.1e-11,Retrotrans_gag|PF03732.13|1.7e-06 R_Transcript_204603:509-1072(+)
ATGTCTGACTCTATTAGACATTCTGTGCTTTATATTGATTCTGCATTTGGTATGTGGTTACATTTAGAGAATAGATTTTCTGTTAGTAATGGTTCCAAGTATTATCAAATAAACAAGGAAATCTATGATTTGAGACAAAAAGTATCTAATACCAATGAATTTTATACTAAGATGAGATGTTTGTGGGAGGAGTTAGATTCTATGAGCAATCTGTCTAAGATAACTCAGTTCACTGATGAAATGAAAGTTTTCTTGAAATCATTGGACAGACAACAAGAAGAACATATGTTATTTCAGTTTTTGAATGGCCTAAACATCATATATAATACTCAAAGGAGTAATTTGTTGTTCATGAATCCTTTACCTACTGTGGAGATGGCTTGTTCTAATTTGCAACAAGAGGAGACACAAAGAGATGTTCTGAGTAATGTTACGGTAAAAGTTGAACCTTTTGGTCTTTATAGTAAGGGGAGAACAATTTTAAGTGCACTGGTTGTGAAAGGTCAGGGCATACAAGAGATAGATGTTGGGCTGAAAATGCCTATCCATCTTGGCATGCTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_204603.p1 GENE.R_Transcript_204603~~R_Transcript_204603.p1 ORF type:complete len:188 (+),score=24.54,UBN2_3|PF14244.2|4.1e-11,Retrotrans_gag|PF03732.13|1.7e-06 R_Transcript_204603:509-1072(+)
MSDSIRHSVLYIDSAFGMWLHLENRFSVSNGSKYYQINKEIYDLRQKVSNTNEFYTKMRCLWEELDSMSNLSKITQFTDEMKVFLKSLDRQQEEHMLFQFLNGLNIIYNTQRSNLLFMNPLPTVEMACSNLQQEETQRDVLSNVTVKVEPFGLYSKGRTILSALVVKGQGIQEIDVGLKMPIHLGML*

Click here to download the sequence:
Link to NCBI Protein BLAST