Transcript Information: R_Transcript_204603.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value0.0001
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.51475814822815
Condition 2: 8 Hour
Replicate 10.27512207805894
Replicate 20.50249172676821
Replicate 30.40790136225589
Condition 3: 24 Hour
Replicate 10
Replicate 20.24781189764694
Replicate 30.24592926614491


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_204603.p3 GENE.R_Transcript_204603~~R_Transcript_204603.p3 ORF type:complete len:89 (+),score=22.58,UBN2_3|PF14244.2|2.1e-14 R_Transcript_204603:230-496(+)
ATGTCTAGTGAGAAAAGAAACAACAATATTCTTTACCGTGACTTGCAAAACCCTCTCTTCTTACATCCTTCAGATGATCCATCATCCATCACAATTGAAGAGAAATTACTTGGAGCTGTGGACTATCGATCCTGGAAACAAAACATGGAAATTGCACTTGCTACAAAGCGAAAGTTAGGGTTCATCAAAGGAACTGTCATAAGATGTGATGATGATCCTGTCAAAGCTGAACAGTGGAATACATGCAATAGTATGGTAATTGTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_204603.p3 GENE.R_Transcript_204603~~R_Transcript_204603.p3 ORF type:complete len:89 (+),score=22.58,UBN2_3|PF14244.2|2.1e-14 R_Transcript_204603:230-496(+)
MSSEKRNNNILYRDLQNPLFLHPSDDPSSITIEEKLLGAVDYRSWKQNMEIALATKRKLGFIKGTVIRCDDDPVKAEQWNTCNSMVIV*

Click here to download the sequence:
Link to NCBI Protein BLAST