Transcript Information: R_Transcript_204607.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value7E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.13317870695438
Condition 2: 8 Hour
Replicate 10.42707903977753
Replicate 20.26001025396727
Replicate 30.63319571931582
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_204607.p1 GENE.R_Transcript_204607~~R_Transcript_204607.p1 ORF type:3prime_partial len:172 (+),score=31.66,UBN2_3|PF14244.2|3.2e-30,Retrotrans_gag|PF03732.13|3.7e-08 R_Transcript_204607:103-615(+)
ATGGAAATTGCATTAGCTACGAAGAGAAAATTAGGTTTTGTGAAGGGAACTGTGCTGAGATGTGATGATGATCCAACAAAGGCTGATCAATGGGACACATGTAACTCTATGGTAATTGCTTGGCTCCTTAATTCCATGATTGAATCAGTCAGACGTTCTGTTTTGTACATTGATTCTGCCTTTGCTATGTGGATGCATCTTGAAACTCGCTTTGCTGTTAGTAATGGTGCTAGAAAGTACAAAATAAATAAAGAAATATATGATCTGAGACAGAATGGTGCTAACATTAATGAATTCTATACTAGAATGAGATGTCTATGGGAAGAATTGGATTCCATGAGTAGTTTGCCAAAAATTACGGAGTTTACTGAAGAGATTAAGACTTTTCTCAAGGCACTTGATAGGCAGCAAGAAGAGCATAGACTCTTTCAGTTCTTAAATGGACTTGACAGTGTATATAACACACAGAGAAGCAACTTGCTGTTGAAATTGCTTGTTCTAATTTGCAACAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_204607.p1 GENE.R_Transcript_204607~~R_Transcript_204607.p1 ORF type:3prime_partial len:172 (+),score=31.66,UBN2_3|PF14244.2|3.2e-30,Retrotrans_gag|PF03732.13|3.7e-08 R_Transcript_204607:103-615(+)
MEIALATKRKLGFVKGTVLRCDDDPTKADQWDTCNSMVIAWLLNSMIESVRRSVLYIDSAFAMWMHLETRFAVSNGARKYKINKEIYDLRQNGANINEFYTRMRCLWEELDSMSSLPKITEFTEEIKTFLKALDRQQEEHRLFQFLNGLDSVYNTQRSNLLLKLLVLICNK

Click here to download the sequence:
Link to NCBI Protein BLAST