Transcript Information: R_Transcript_204608.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.57489640802264
Replicate 20.16532520012833
Replicate 30.18036801256813
Condition 2: 8 Hour
Replicate 10.96401043099391
Replicate 20.5282098072721
Replicate 31.5721867466477
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.34468826278579


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_204608.p2 GENE.R_Transcript_204608~~R_Transcript_204608.p2 ORF type:complete len:127 (+),score=16.14,UBN2_3|PF14244.2|1.3e-11,UBN2_3|PF14244.2|2.9e+03,Retrotrans_gag|PF03732.13|1.4e-07 R_Transcript_204608:638-1018(+)
ATGATTGAGTCAATTCGAAAGTATGTGATATACTATTATTCTACTTATTCAATGTGGTTACATCTTGAGAAGAGGTTTTCTATAGACAATGGTTCCAGAAAATACAAACTAAACAAAGATGTGTATGATCTGAGGCAAAATGGAACTAACATAAGTGAATTTTACACTAGAATAAGATGCCTTTGGGAAGAGCTTGATTCAATGAATGAACTGCCAAAATTGAGTGTCATAGCACCTGAGATGGATGCATTTTTTAAAGCACTTGCCAAACAACAAGAAGAGCACAGATTATTTCAGTTCCTTAATGGACTAAAGAATGTGTATAACACACAATTTCAAAATCCTCTCCCTACTGTTGAGATGGCTTGTTTCGATCTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_204608.p2 GENE.R_Transcript_204608~~R_Transcript_204608.p2 ORF type:complete len:127 (+),score=16.14,UBN2_3|PF14244.2|1.3e-11,UBN2_3|PF14244.2|2.9e+03,Retrotrans_gag|PF03732.13|1.4e-07 R_Transcript_204608:638-1018(+)
MIESIRKYVIYYYSTYSMWLHLEKRFSIDNGSRKYKLNKDVYDLRQNGTNISEFYTRIRCLWEELDSMNELPKLSVIAPEMDAFFKALAKQQEEHRLFQFLNGLKNVYNTQFQNPLPTVEMACFDL*

Click here to download the sequence:
Link to NCBI Protein BLAST