Transcript Information: R_Transcript_205016.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.071023194376338
Replicate 20.24509300096846
Replicate 30.2673938240796
Condition 2: 8 Hour
Replicate 10.28582721728302
Replicate 20.17401464467849
Replicate 30.28251534039513
Condition 3: 24 Hour
Replicate 10.26798996763857
Replicate 20.2574543839367
Replicate 30.17033233219375


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_205016.p1 GENE.R_Transcript_205016~~R_Transcript_205016.p1 ORF type:complete len:257 (+),score=76.58 R_Transcript_205016:360-1130(+)
ATGTCCCTCATGTCCTATTTCAGTAAAATGAAAAGACTTTGGGATGAAATCCAGAGTATCAGGAAATTTCCAGTTTGTAGCTGTGGAATTTTGAGCAAGTGTACTTGTAGTTTCTTGAAGAGACTATCTGATTTTGAAGGAGAAGAAAAACGGATGAAGTTTTTGCTTGGTTTGAACAATGGTTTTGATAATACCATTGAAAATATCCTTGCTATGGACCCCCTCCCACCTCTGAATAGGGCTTATGCTATAGCATCTCAGATAGAAAAGCAAAAGGAGATTGCTGGGATGCAGGAAGGTGCACAAGAAGCAAGTGCTATGGTTGCTCAGAAAGGGGCAAAGAAGGGTCCATCTGGACAGCAGAGAGGAGTTTTTGTGCCTGGAAAGAAGGACTGGAAGAAAGAGAAGCTTGAGAGGAAGTGTGAGCACTGCAAAGGAAGGGGGCACACCATAGATCAATGTTTCAAAATCATAGGGTACCCTGATTGGTACCCAGGACTGAAAGGTGGCAAGAATGGAGCTGGAGGAAGCAAGATGGTAGCAAATGTTCAAGCTGAGGGAAGTGAGACTGATTCTGATAATCCTCTGGATCAAGAAACCTGTGGGAAAGGGCACTCATCTATGGATCCTAGGATGATTCATGTTGTGGTGCAGGAGGTGATGAAAGCTATGAAGGGAAAGCAGACTCTTGAGGAAAAGGGAGCTGGGACTAGAGGTGCTGCATTCACCAGCTGTGCAGGTAATATTAATCTATCAAATAATTGCAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_205016.p1 GENE.R_Transcript_205016~~R_Transcript_205016.p1 ORF type:complete len:257 (+),score=76.58 R_Transcript_205016:360-1130(+)
MSLMSYFSKMKRLWDEIQSIRKFPVCSCGILSKCTCSFLKRLSDFEGEEKRMKFLLGLNNGFDNTIENILAMDPLPPLNRAYAIASQIEKQKEIAGMQEGAQEASAMVAQKGAKKGPSGQQRGVFVPGKKDWKKEKLERKCEHCKGRGHTIDQCFKIIGYPDWYPGLKGGKNGAGGSKMVANVQAEGSETDSDNPLDQETCGKGHSSMDPRMIHVVVQEVMKAMKGKQTLEEKGAGTRGAAFTSCAGNINLSNNCN*

Click here to download the sequence:
Link to NCBI Protein BLAST