Transcript Information: R_Transcript_20518.p1


Annotated TAIR IDAT5G55960.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22662726-22664762 | Forward length=648
E-Value4E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9372580846674
Replicate 21.6893575047596
Replicate 30.7898875033156
Condition 2: 8 Hour
Replicate 12.533020511784
Replicate 22.0561730428676
Replicate 31.4604744177323
Condition 3: 24 Hour
Replicate 11.3194142084887
Replicate 20.7605261686406
Replicate 32.0126624999446


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_20518.p1 GENE.R_Transcript_20518~~R_Transcript_20518.p1 ORF type:5prime_partial len:87 (+),score=8.46 R_Transcript_20518:2-262(+)
AGAGAACAATCTAGGGCAAATAAACCACCTGATGTAGAACTTGAAAAATGGAACTGGCTAGTTGATTTTTGGATGACAGAAAAAAGAACAGTTTCTGATACAATCAACTGTATTTTTCTCGGTTCTGTACTATCTTCTAACATCAGAATCCGGTGGAGTGATCGAACAAATCATGAAAATCATACCAGCACCAACATCTATGAAAAATCGATGTGTTCAGGCTCTCAACAATGCAATCTCAGGGGTGCTATACAGAGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_20518.p1 GENE.R_Transcript_20518~~R_Transcript_20518.p1 ORF type:5prime_partial len:87 (+),score=8.46 R_Transcript_20518:2-262(+)
REQSRANKPPDVELEKWNWLVDFWMTEKRTVSDTINCIFLGSVLSSNIRIRWSDRTNHENHTSTNIYEKSMCSGSQQCNLRGAIQR*

Click here to download the sequence:
Link to NCBI Protein BLAST